Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt1e10
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces pom... 70 3e-13
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po... 58 1e-09
SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces po... 48 2e-06
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4... 28 1.6
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 27 2.2
SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|... 27 2.9
SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease Pac1|S... 27 3.8
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 26 6.6
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 26 6.6
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 25 8.7
SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1 |Schizosaccharo... 25 8.7
>SPCC569.07 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 470
Score = 70.1 bits (164), Expect = 3e-13
Identities = 49/179 (27%), Positives = 76/179 (42%), Gaps = 18/179 (10%)
Frame = +1
Query: 232 YGRFISTRSSRREPAITRVITSLAYKVDKKMISLAEGMPNEGVFPFKKLSXXXXXXXXXX 411
Y +S S+ RE +++ + D KM+S A G PN FP KLS
Sbjct: 8 YQHHLSLESASREYGPFQMLGRIQSDSDIKMLSFAGGEPNPSKFPIHKLSVSFPEVNSWE 67
Query: 412 XXXX------------------ELAAALQYVPSQGLPSLLTELRKFQEDIHRPPDVPRDL 537
+L ALQY QG+P L+ ++ IH P D+
Sbjct: 68 KDTNKDATVSYELSNNANEGSLDLLGALQYGQCQGIPELVKFIKDHVGQIHMPQYKDWDI 127
Query: 538 MITNGGQHGIYQCAELLLEPGDPIVTTEYAYTGLHSTLKPYQPEILGVPEDNDGLIPET 714
ITNG G+ C LL+ GD I+ +Y Y + ++P + + + D +G++PE+
Sbjct: 128 KITNGNTIGLEYCLRLLVNRGDCILIEKYTYPAAITAMRPLGVKFIPIDMDENGMLPES 186
>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 481
Score = 58.0 bits (134), Expect = 1e-09
Identities = 27/94 (28%), Positives = 51/94 (54%)
Frame = +1
Query: 436 ALQYVPSQGLPSLLTELRKFQEDIHRPPDVPRDLMITNGGQHGIYQCAELLLEPGDPIVT 615
+LQY QG+ L+ +++ IH P D+ ++NG G+ C LL+ GD ++T
Sbjct: 97 SLQYGQCQGISELVGFIKEHIRRIHAPRYENWDIKMSNGNTSGLEYCLRLLVNYGDHVLT 156
Query: 616 TEYAYTGLHSTLKPYQPEILGVPEDNDGLIPETL 717
+Y Y + ++ + + V D++G++PE+L
Sbjct: 157 EKYTYPAAITAMRALGVQFVSVDMDSEGMLPESL 190
>SPAC56E4.03 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 47.6 bits (108), Expect = 2e-06
Identities = 40/184 (21%), Positives = 72/184 (39%), Gaps = 20/184 (10%)
Frame = +1
Query: 226 EDYGRFISTRSSRREPAITRVITSLAYKVDKKMISLAEGMPNEGVFPFK----------- 372
+D +S S+ R+ + + + + K+ISLA G+PN FP +
Sbjct: 6 KDLSHHLSVESASRKQSPLKAVALSKSSRNIKIISLAGGLPNPEYFPIREMDAEIPAINS 65
Query: 373 ---------KLSXXXXXXXXXXXXXXELAAALQYVPSQGLPSLLTELRKFQEDIHRPPDV 525
KL L+ ALQY G L L++ IH PP
Sbjct: 66 WKKDSSNSGKLDTVSVPMSSSDSDVLPLSVALQYGQGSGAALLSQFLKEHTRIIHNPPYE 125
Query: 526 PRDLMITNGGQHGIYQCAELLLEPGDPIVTTEYAYTGLHSTLKPYQPEILGVPEDNDGLI 705
++++T G + +L GD I+ +Y++ +++P + + D G +
Sbjct: 126 GWNIIMTTGNTSCLDIALRMLTNRGDSILVEKYSFPSALQSMRPLGLSCIPIDMDQFGFL 185
Query: 706 PETL 717
PE++
Sbjct: 186 PESM 189
>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 27.9 bits (59), Expect = 1.6
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = +1
Query: 106 VFEIKPCVVLRAKYSQACTPE---FFKFYDENINVGDHKVLDVEDYGRFISTRS 258
+F I + AK + C P +F DENINVG+ + + Y FI+ S
Sbjct: 331 IFPIHAYLNFNAKLYEECIPPSILYFNKNDENINVGNIEDITNYMYETFINEAS 384
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 205 DHKVLDVEDYGRFISTRSSRREPAITRVITSLAYKVDKKMISLAE 339
D + +ED R I TRS+ +E R T + Y D SLA+
Sbjct: 69 DPRTTSLEDVPRLILTRSNSQEQTPLRTHTPVEYMSDSIHKSLAD 113
>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 464
Score = 27.1 bits (57), Expect = 2.9
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +3
Query: 225 RRLWSIYKHQVFKERTSYHKSDHFPR 302
RR W + KHQ+ + H S++F +
Sbjct: 387 RRFWGMIKHQLKRRDAILHSSEYFSK 412
>SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease
Pac1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = +3
Query: 384 GHEKGRWYNDGGQRAGCGVAVCAFTGASIATD-GASQISRG 503
GH + RW + G A V C F G +A GA+Q G
Sbjct: 303 GHIEYRWVDGAGGSAEGYVIACIFNGKEVARAWGANQKDAG 343
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 613 TTEYAYTGLHSTLKPYQPEILGVPEDNDGL-IPETL 717
+T + +GLHS L+P + E+ G G P+TL
Sbjct: 156 STSSSLSGLHSDLRPLKTELYGQLNSECGARFPQTL 191
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +3
Query: 456 TGASIATDGASQISRGHTPSSRRAPRPHDHQ 548
T T+G S +SR HT + R P+ Q
Sbjct: 50 TSTVAGTEGGSSLSRRHTSAESRKALPNQQQ 80
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 228 RLWSIYKHQVFKERTSYHKSDH 293
R IYK Q K+++S+HK H
Sbjct: 538 RTTKIYKAQQHKQKSSHHKHHH 559
>SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 399
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/35 (28%), Positives = 21/35 (60%)
Frame = +1
Query: 133 LRAKYSQACTPEFFKFYDENINVGDHKVLDVEDYG 237
+R+K +Q CTP F+ + + + ++L+ E+ G
Sbjct: 303 IRSKLAQGCTPRDFETFPPVVAMLRKRLLECEEKG 337
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,126,566
Number of Sequences: 5004
Number of extensions: 65456
Number of successful extensions: 220
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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