Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt1e10
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0540 + 3957622-3960903 32 0.56
09_04_0366 + 16970063-16970254,16970697-16970720,16972440-16973591 30 1.7
04_03_1047 - 21978782-21978808,21979301-21980168,21980272-219803... 29 3.9
07_01_0060 - 445619-445739,446026-446182,446274-446365,446516-44... 29 5.2
07_03_1418 - 26421341-26421527,26421618-26423157,26424293-26424524 28 6.9
01_06_1271 + 35890317-35890762,35891113-35891173,35891669-358918... 28 6.9
10_03_0002 - 6858257-6861205 28 9.1
08_01_0229 + 1834102-1834358,1834442-1834901 28 9.1
07_01_0761 + 5849466-5850677 28 9.1
02_05_0894 - 32585640-32585672,32585939-32585967,32586937-32588443 28 9.1
>01_01_0540 + 3957622-3960903
Length = 1093
Score = 31.9 bits (69), Expect = 0.56
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +3
Query: 393 KGRWYNDGGQRAGCGVAVCAFTGASIATDGASQISRGHTPSSRRAPRPHDHQRRAARHLP 572
KG W +DG G G + F G +A D A+ +R P + + D RR L
Sbjct: 85 KGDWKHDGDGDGGGGAPLLPFDGTDVAEDAAAGAARDPLPLASFSLTHVDAARRGRTALN 144
Query: 573 V 575
V
Sbjct: 145 V 145
>09_04_0366 + 16970063-16970254,16970697-16970720,16972440-16973591
Length = 455
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +1
Query: 442 QYVPSQGLPSLLTEL-RKFQEDIHRPPDVPRDLMITNGGQHGIYQCAELLLEPGDPIVTT 618
QY G+P L + + +F +D D +++ +T+G I L+ PGD ++
Sbjct: 127 QYARGYGVPELNSAIAERFLKDSGLQVDPEKEVTVTSGCTEAIAATILGLINPGDEVILF 186
Query: 619 EYAYTGLHSTL 651
Y +TL
Sbjct: 187 APFYDSYEATL 197
>04_03_1047 -
21978782-21978808,21979301-21980168,21980272-21980399,
21981786-21982247,21982813-21982842,21983441-21983658,
21983777-21983894
Length = 616
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 399 RWYNDGGQRAGCGVAVCAFTGASIAT 476
RWYN GG GC + A + A + T
Sbjct: 590 RWYNSGGADDGCDASASAQSSAQVFT 615
>07_01_0060 -
445619-445739,446026-446182,446274-446365,446516-446580,
447052-447117,447707-447838,448125-448298,449025-449183,
449297-449384,449492-449573,449757-449874,449959-450162
Length = 485
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +1
Query: 445 YVPSQGLPSLLTELRKFQEDIHRPPDVPRDLMITNGGQHGIYQCAELLL 591
Y S+G+P + E+ +F E P P + +T+G G+ Q ++
Sbjct: 110 YSDSRGIPGIRKEVAEFIERRDGYPSDPELIYLTDGASKGVMQMLNTII 158
>07_03_1418 - 26421341-26421527,26421618-26423157,26424293-26424524
Length = 652
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/57 (21%), Positives = 27/57 (47%)
Frame = +3
Query: 372 ETKHGHEKGRWYNDGGQRAGCGVAVCAFTGASIATDGASQISRGHTPSSRRAPRPHD 542
++ H H+K ++ +++G A G + +G + H P + ++PRP +
Sbjct: 294 KSAHCHQKTAPHDFNSKKSGASAESAAKNGTPDSGNGGGYNPKHHKPHTSQSPRPQN 350
>01_06_1271 +
35890317-35890762,35891113-35891173,35891669-35891813,
35891903-35891982,35892465-35892548,35892644-35892718,
35893150-35893242,35893315-35893503
Length = 390
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 511 RPPDVPRDLMITNGGQHGIYQCAELLLEPGDPIVTTEYAYTG 636
RPP PR +++T G + LLE GD ++ + +TG
Sbjct: 97 RPP--PRRVVVTGGAGFVGSHLVDRLLEQGDSVIVVDNFFTG 136
>10_03_0002 - 6858257-6861205
Length = 982
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 465 SIATDGASQISRGHTPSSRRAPRPHDHQRRAAR 563
SI G+++ SRGH S +P H +RR R
Sbjct: 351 SITGAGSNRRSRGHDERSVHSPPDHHRERRVER 383
>08_01_0229 + 1834102-1834358,1834442-1834901
Length = 238
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Frame = -3
Query: 625 RTQW*RWGRRAPGVAQR-----TGRCRAARRW*S*GLG 527
R +W RWGRR G A R G +A RW G+G
Sbjct: 139 RRRWRRWGRRRGGGATRWGSDGNGGAVSATRWGRTGMG 176
>07_01_0761 + 5849466-5850677
Length = 403
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -2
Query: 620 SVVTMGSPGSRSSSAHW*MPCCPPLVIMRSRG 525
+V+T+ G R +A W PPLV+ RG
Sbjct: 194 AVLTLAVAGGRGQNARWREAPSPPLVVRTRRG 225
>02_05_0894 - 32585640-32585672,32585939-32585967,32586937-32588443
Length = 522
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +3
Query: 405 YNDGGQRAGCGVAVCAFTGASIATDGASQISRGHTPSS 518
+ND QR G + C F GA+ + A ++ + PS+
Sbjct: 475 FNDYYQRKGRTIGTCDFAGAAYVVNQAPKMGKCELPST 512
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,067,949
Number of Sequences: 37544
Number of extensions: 477189
Number of successful extensions: 1472
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1472
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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