Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1e10
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032637-13|CAA21615.1|  709|Caenorhabditis elegans Hypothetical...    30   1.5  
U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    29   2.7  
Z82073-3|CAB04926.1|  631|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    28   8.1  

>AL032637-13|CAA21615.1|  709|Caenorhabditis elegans Hypothetical
           protein Y43F8C.14 protein.
          Length = 709

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 469 MEAPVKAHTATPQPALCPPSLYHRP 395
           ++AP+   T+TP+PA+C P  +  P
Sbjct: 280 LQAPIALATSTPKPAMCRPPKHSEP 304


>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -3

Query: 505 CPLEICEAPSVAMEAPVKAHTATPQPALCPPSLYHRPFSCPCLV 374
           CP + C  P +    P       P P   PP    RP SCPC++
Sbjct: 60  CPAQFCPPPPICPPPP-----PPPMPCPPPPPPMPRP-SCPCMM 97


>Z82073-3|CAB04926.1|  631|Caenorhabditis elegans Hypothetical
           protein W06D12.5 protein.
          Length = 631

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +1

Query: 115 IKPCVVLRAKYSQACTPEFFKFYDE 189
           IK C++L A Y  ACT  F  FYDE
Sbjct: 402 IKACLLLLASYLGACT-IFIYFYDE 425


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = -3

Query: 508 VCPLEICEAPSVAMEAPVKAHTATPQPALCPPSLYHRPFSCPC 380
           +CP + C  P +    P       P P +CPP     P   PC
Sbjct: 50  ICPPQFCPPPPMCPPPP-----PPPPPPMCPPPPPPMPSYSPC 87


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,518,464
Number of Sequences: 27780
Number of extensions: 386422
Number of successful extensions: 1042
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)