Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1e09
         (135 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   1.8  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   1.8  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               20   3.1  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    19   5.4  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    19   7.2  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
          determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 9/25 (36%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = +1

Query: 4  RKY--ITDTKKKIFLEKTNKKCNQK 72
          R+Y  + + K+K+  E+TN+K N +
Sbjct: 16 RRYEKLHNEKEKLLEERTNRKRNSR 40


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
          determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 9/25 (36%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = +1

Query: 4  RKY--ITDTKKKIFLEKTNKKCNQK 72
          R+Y  + + K+K+  E+TN+K N +
Sbjct: 16 RRYEKLHNEKEKLLEERTNRKRNSR 40


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 52 NKKCNQKCFFT 84
          N KC  KCF T
Sbjct: 54 NLKCYLKCFMT 64


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 9   IYNRYEKKNFFGKN*QKM*SKV 74
           I    E++N FG+N + +  KV
Sbjct: 91  ILGHSERRNIFGENDELIAEKV 112


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +3

Query: 12  YNRYEKKNFFGKN 50
           YN Y KK ++  N
Sbjct: 101 YNNYNKKLYYNIN 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,949
Number of Sequences: 438
Number of extensions: 293
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 25
effective length of database: 135,393
effective search space used:  2572467
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)