Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1e04
         (742 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0099 + 20070925-20073867                                         32   0.55 
02_04_0475 + 23229046-23229480,23230062-23231205,23232187-232323...    30   2.2  
02_03_0144 + 15694766-15694883,15694980-15697612                       29   2.9  
11_04_0278 + 15711441-15711714,15712272-15712307,15713078-15713283     28   6.8  
03_01_0578 + 4270835-4271482,4271763-4272140,4272353-4272444,427...    28   6.8  

>11_06_0099 + 20070925-20073867
          Length = 980

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 13/62 (20%), Positives = 33/62 (53%)
 Frame = +3

Query: 483 LETLAHLHAVSMTLRIKKPDEFKRIADLIPEAYYTEKNRDWYSKFQHKAVMIDQAILIEH 662
           L  L+HL   S ++    P     +  ++P+ YYT ++ +  S   +K+++  + + +E+
Sbjct: 697 LGNLSHLDLASNSISGPLPQYLANLTGMVPKQYYTNEHEERLSGCDYKSLVTMKGLELEY 756

Query: 663 ED 668
           ++
Sbjct: 757 DE 758


>02_04_0475 +
           23229046-23229480,23230062-23231205,23232187-23232334,
           23232776-23234225
          Length = 1058

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +3

Query: 318 LQQSLGASECIQN--SVPICYGCYLDGVNDYIVLEDLGESRCKSL 446
           + Q  G S+C+ +  S+  C    LDG +  I+L+DL E+ C  L
Sbjct: 281 ISQIKGQSDCLDDLQSISNCLEEILDGKSCLIILDDLWENSCFQL 325


>02_03_0144 + 15694766-15694883,15694980-15697612
          Length = 916

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = +3

Query: 291 SDVLPILVDLQQSLGASECIQNSVPICYGCYLDG--VNDYIVLEDLGESRCKSLTKHPTK 464
           +D  P+L+D  +++G SE         Y C  DG   +D   +   GE    +++ H  K
Sbjct: 157 ADSSPMLIDKVENIGTSENTDLGKGYSYDCVSDGNAGSDVAAVHIAGEEP-GAISNHSMK 215

Query: 465 CERDSVLETL 494
            E DSV + +
Sbjct: 216 GEVDSVTDQI 225


>11_04_0278 + 15711441-15711714,15712272-15712307,15713078-15713283
          Length = 171

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 282 LFYSDVLPILVDLQQSLGASECIQNSVP 365
           L YSD+L +LVD  Q   +S  +QN  P
Sbjct: 138 LEYSDILSLLVDTFQERNSSAYVQNESP 165


>03_01_0578 +
           4270835-4271482,4271763-4272140,4272353-4272444,
           4272637-4273240
          Length = 573

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +3

Query: 171 IKVTGKRYSTSFIGKGFVDNERI-KNSLNCAELFRREALFYSDVLPILVDLQQSLGASEC 347
           IKV+   +ST ++     DNE I  N L   +    E +  S  +P+LV ++   G + C
Sbjct: 53  IKVSDSSHST-YVSLSKEDNELILSNKLQLGQFIYVEKVQSSIPVPVLVGVRPVPGRNPC 111

Query: 348 IQN 356
           I N
Sbjct: 112 IGN 114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,186,661
Number of Sequences: 37544
Number of extensions: 323326
Number of successful extensions: 723
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)