Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt1e04
(742 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000266-9|AAC71169.1| 566|Caenorhabditis elegans Hypothetical ... 32 0.49
U41020-2|AAA82332.3| 1732|Caenorhabditis elegans Osmotic avoidan... 29 3.5
DQ360811-1|ABC88648.1| 1737|Caenorhabditis elegans intraflagella... 29 3.5
U53153-6|AAT81184.1| 638|Caenorhabditis elegans Germinal center... 29 4.6
U53153-5|AAK77641.1| 651|Caenorhabditis elegans Germinal center... 29 4.6
U53153-4|AAK77642.2| 650|Caenorhabditis elegans Germinal center... 29 4.6
U53153-3|AAC69038.1| 653|Caenorhabditis elegans Germinal center... 29 4.6
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 29 4.6
Z66498-5|CAA91294.2| 513|Caenorhabditis elegans Hypothetical pr... 28 6.0
Z54327-14|CAA91124.2| 513|Caenorhabditis elegans Hypothetical p... 28 6.0
>AF000266-9|AAC71169.1| 566|Caenorhabditis elegans Hypothetical
protein W08F4.2 protein.
Length = 566
Score = 31.9 bits (69), Expect = 0.49
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Frame = +3
Query: 93 SDEDIENIELTKAAPNGEGLLS-----AVYRIKVTGKRYSTSFIGKGFVDNERIKNSLNC 257
S +DIEN +L K P E L+ ++ + T KR + IGK +DN + LNC
Sbjct: 383 SCKDIENYQLFKMFPCLENLVVLDGPISIPNLTQTFKRLQLT-IGKVTLDNLFM---LNC 438
Query: 258 AELFRREALFYSDVLPILVDLQQSLGASECIQNSVPICY 374
++LF F + VL I V +Q +G S S+ I +
Sbjct: 439 SQLFVNYRTFSNKVLNIFV--RQWVGGSNPSLKSITISF 475
>U41020-2|AAA82332.3| 1732|Caenorhabditis elegans Osmotic avoidance
abnormal protein1 protein.
Length = 1732
Score = 29.1 bits (62), Expect = 3.5
Identities = 21/83 (25%), Positives = 34/83 (40%)
Frame = +3
Query: 396 NDYIVLEDLGESRCKSLTKHPTKCERDSVLETLAHLHAVSMTLRIKKPDEFKRIADLIPE 575
ND+ E + + C+SL + +E HL A + LR KPD R I
Sbjct: 1172 NDWADAERVAKDHCESLLPDVYTGQARRAIEEGDHLRAETFLLRANKPDIILRY--FIEN 1229
Query: 576 AYYTEKNRDWYSKFQHKAVMIDQ 644
+ + R + H+A +I +
Sbjct: 1230 EMWPDALRIAQNYLPHQAALIQE 1252
>DQ360811-1|ABC88648.1| 1737|Caenorhabditis elegans intraflagellar
transport protein protein.
Length = 1737
Score = 29.1 bits (62), Expect = 3.5
Identities = 21/83 (25%), Positives = 34/83 (40%)
Frame = +3
Query: 396 NDYIVLEDLGESRCKSLTKHPTKCERDSVLETLAHLHAVSMTLRIKKPDEFKRIADLIPE 575
ND+ E + + C+SL + +E HL A + LR KPD R I
Sbjct: 1177 NDWADAERVAKDHCESLLPDVYTGQARRAIEEGDHLRAETFLLRANKPDIILRY--FIEN 1234
Query: 576 AYYTEKNRDWYSKFQHKAVMIDQ 644
+ + R + H+A +I +
Sbjct: 1235 EMWPDALRIAQNYLPHQAALIQE 1257
>U53153-6|AAT81184.1| 638|Caenorhabditis elegans Germinal center
kinase family protein1, isoform d protein.
Length = 638
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 315 DLQQSLGA-SECIQNSVPICYGCYLDGVNDYIVLEDLGESRCKSLTK 452
D+QQ + S+C V +G +L G +I++E LG LTK
Sbjct: 61 DIQQEIQVLSQCDSQYVTKYFGSFLKGSKLWIIMEYLGGGSALDLTK 107
>U53153-5|AAK77641.1| 651|Caenorhabditis elegans Germinal center
kinase family protein1, isoform b protein.
Length = 651
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 315 DLQQSLGA-SECIQNSVPICYGCYLDGVNDYIVLEDLGESRCKSLTK 452
D+QQ + S+C V +G +L G +I++E LG LTK
Sbjct: 74 DIQQEIQVLSQCDSQYVTKYFGSFLKGSKLWIIMEYLGGGSALDLTK 120
>U53153-4|AAK77642.2| 650|Caenorhabditis elegans Germinal center
kinase family protein1, isoform c protein.
Length = 650
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 315 DLQQSLGA-SECIQNSVPICYGCYLDGVNDYIVLEDLGESRCKSLTK 452
D+QQ + S+C V +G +L G +I++E LG LTK
Sbjct: 74 DIQQEIQVLSQCDSQYVTKYFGSFLKGSKLWIIMEYLGGGSALDLTK 120
>U53153-3|AAC69038.1| 653|Caenorhabditis elegans Germinal center
kinase family protein1, isoform a protein.
Length = 653
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 315 DLQQSLGA-SECIQNSVPICYGCYLDGVNDYIVLEDLGESRCKSLTK 452
D+QQ + S+C V +G +L G +I++E LG LTK
Sbjct: 76 DIQQEIQVLSQCDSQYVTKYFGSFLKGSKLWIIMEYLGGGSALDLTK 122
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 28.7 bits (61), Expect = 4.6
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = -2
Query: 651 KSLDLSLQLCVEISNTNHDFFQ-YSTLLELNRQSF*IHRAS*FAKSSILRANVLVSLELN 475
KS + L+ C I + + F + Y TL E NRQ F +HR S F S + +L+ ++
Sbjct: 2229 KSSVIFLEECYFIVSQIYLFSKLYLTLNESNRQLFRVHRFSTFCFSQFIFFIILIKFRIS 2288
>Z66498-5|CAA91294.2| 513|Caenorhabditis elegans Hypothetical
protein C26D10.6a protein.
Length = 513
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 474 DSVLETLAHLHAVSMTLRIKKPDEFKRIADLIPEAYYTEKNRDWYS 611
D+ + L H+ A + TL ++ + PE Y EK+R+W S
Sbjct: 222 DAGCQELTHIGAAATTLHFRQDSPVYSGCEF-PETLYREKSRNWES 266
>Z54327-14|CAA91124.2| 513|Caenorhabditis elegans Hypothetical
protein C26D10.6a protein.
Length = 513
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 474 DSVLETLAHLHAVSMTLRIKKPDEFKRIADLIPEAYYTEKNRDWYS 611
D+ + L H+ A + TL ++ + PE Y EK+R+W S
Sbjct: 222 DAGCQELTHIGAAATTLHFRQDSPVYSGCEF-PETLYREKSRNWES 266
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,757,590
Number of Sequences: 27780
Number of extensions: 321002
Number of successful extensions: 873
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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