Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1d20
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...    47   2e-06
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p...    27   2.1  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    27   2.8  
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    26   4.8  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    25   8.5  

>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 23/44 (52%), Positives = 27/44 (61%)
 Frame = +3

Query: 552 KSIRRAFIRKVYAILMCQLMVTMGFIALFLYHRPTKVWVAQNPF 683
           KSIR AF+RKVYAIL  QL VT  F  +F  H     WV  +P+
Sbjct: 52  KSIRMAFLRKVYAILTAQLFVTSLFGGIFYLHPAFSFWVQMHPW 95


>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 485

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 332 WTVPTGWRLPARWSLPSRRSVSPGWSIP 415
           W V +   +P+RW   +   ++P W IP
Sbjct: 350 WNVYSKKDIPSRWHYSNNERIAPVWMIP 377



 Score = 27.1 bits (57), Expect = 2.8
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
 Frame = +2

Query: 215 GF-GKTKLEGPTKLREHVSESRRTVPSGRG--VPARWTVPARWTVPTGWRLPARWSLPSR 385
           GF G++ L+        V+ SR ++PS     V ++  +P+RW      R+   W +P  
Sbjct: 320 GFRGESDLDDEYIYESLVNYSRSSLPSAENWNVYSKKDIPSRWHYSNNERIAPVWMIP-- 377

Query: 386 RSVSPGWSI 412
                GWS+
Sbjct: 378 ---DVGWSL 383


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 18/80 (22%), Positives = 31/80 (38%)
 Frame = +2

Query: 221 GKTKLEGPTKLREHVSESRRTVPSGRGVPARWTVPARWTVPTGWRLPARWSLPSRRSVSP 400
           G   L   + L      +  + P    VP   ++ +  T+PT   +P   S P+  S+  
Sbjct: 76  GSKSLSSSSILSNSTISTSSSTPITASVPTSSSILSNSTIPTTSPVPTTSSTPTSSSILS 135

Query: 401 GWSIPAGRICAPSAWLPTCI 460
             +IP+    + S    T I
Sbjct: 136 NSTIPSSSSISASTITTTII 155


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +1

Query: 631 LCSCTTDRPKSGWPKIPSCSGV 696
           LC   T      W K+P C GV
Sbjct: 270 LCGSPTQATMPNWEKLPGCEGV 291


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/43 (23%), Positives = 22/43 (51%)
 Frame = -1

Query: 449 EARLRGRISALRVCSTRGIRSSWRVSSTLRVTSTLWVRSTLRV 321
           EA++R R++ + +   RG+     +   +++   LWV   + V
Sbjct: 853 EAKIRSRVNLIALSLERGLGIIRSLGEAVQLAPALWVEDAIDV 895


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,814,621
Number of Sequences: 5004
Number of extensions: 59518
Number of successful extensions: 157
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)