Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt1d20
(734 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1105 + 30438140-30438350,30438448-30438926 38 0.008
05_04_0254 - 19444409-19444621,19444724-19444887,19444974-194450... 36 0.033
07_01_0553 - 4119782-4119988,4120160-4120320,4120861-4121155 35 0.058
01_05_0710 + 24492337-24493053 33 0.24
02_01_0302 - 2021221-2023305 30 1.7
01_07_0095 + 41053562-41053603,41054609-41054846,41055064-410553... 30 1.7
11_06_0192 + 21128298-21128829,21129341-21129407,21131169-211312... 30 2.2
03_06_0292 - 32886148-32886354,32886997-32887154,32887265-328873... 30 2.2
04_04_0824 - 28399144-28399385,28400193-28400312,28400422-284004... 29 2.9
04_04_0662 - 27051508-27051828,27051878-27053438,27054333-27054733 29 2.9
08_01_1022 + 10323158-10323393,10323486-10323531,10325887-103259... 29 3.8
03_05_0306 - 22956474-22956980 29 5.1
12_02_0065 - 13109652-13110746,13110843-13111762,13139462-131395... 28 6.7
08_02_0969 - 23126389-23126670,23126764-23126947,23127017-231278... 28 6.7
10_08_0888 - 21317163-21317687,21318044-21318153,21318258-21318408 28 8.8
08_01_0445 + 3942820-3943030,3943719-3943853,3943942-3944150,394... 28 8.8
05_05_0033 + 21737075-21737721,21737819-21738134,21738463-21739722 28 8.8
05_03_0122 - 8669422-8669609,8669759-8670111,8670669-8670824,867... 28 8.8
>03_05_1105 + 30438140-30438350,30438448-30438926
Length = 229
Score = 37.9 bits (84), Expect = 0.008
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = +3
Query: 558 IRRAFIRKVYAILMCQLMVTMGFIALFLYHRPTKVWVAQNPFMF 689
+R AF+RKVYAIL Q+++T+ ++ ++ RP ++ P F
Sbjct: 15 LRWAFVRKVYAILSIQMLLTIAVASVVVFVRPVALFFVSTPAGF 58
>05_04_0254 -
19444409-19444621,19444724-19444887,19444974-19445087,
19446086-19446395
Length = 266
Score = 35.9 bits (79), Expect = 0.033
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +3
Query: 534 GFDFTEKSIRRAFIRKVYAILMCQLMVTMGFIALFLYHRPTKVWVAQNP 680
G E ++R F+RKVY IL QL++T AL + H ++ +P
Sbjct: 43 GISRGESALRWGFVRKVYGILAAQLLLTTAVSALTVLHPTLNATLSSSP 91
>07_01_0553 - 4119782-4119988,4120160-4120320,4120861-4121155
Length = 220
Score = 35.1 bits (77), Expect = 0.058
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Frame = +3
Query: 507 SVGEDGEVKGFDFTEKSIRRAFIRKVYAILMCQLMVTMGFIALFLYHRPT--KVWVAQNP 680
+VG G + +R AFIRKVYAI+ QL+VT+ IA +Y P + ++A+ P
Sbjct: 25 AVGVAGVACTYMIERPELRWAFIRKVYAIVATQLVVTVA-IAAAVYSVPAIRRFFLARTP 83
>01_05_0710 + 24492337-24493053
Length = 238
Score = 33.1 bits (72), Expect = 0.24
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = -1
Query: 500 RWDIARFTVTSAAICRLEARLRGRISALRVCSTRGIRSSWRVSSTLR 360
R D A F V A +CRLE R ++ALR + GIR+S ++ ++R
Sbjct: 153 RPDSATFAVAVAGLCRLEDP-RNALAALREMAVDGIRTSAKLRESVR 198
>02_01_0302 - 2021221-2023305
Length = 694
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/67 (29%), Positives = 25/67 (37%)
Frame = +2
Query: 239 GPTKLREHVSESRRTVPSGRGVPARWTVPARWTVPTGWRLPARWSLPSRRSVSPGWSIPA 418
G H S T PS P+ T P+ + P G P+ S PS + P S P
Sbjct: 476 GKPSTPSHPSPPGSTTPSYPSPPSSSTTPSYHSPPQGHTTPSHPSPPSSSTAPPSHSPPQ 535
Query: 419 GRICAPS 439
PS
Sbjct: 536 STPTHPS 542
>01_07_0095 +
41053562-41053603,41054609-41054846,41055064-41055312,
41055419-41055469,41056044-41056256,41056305-41056367,
41056422-41056474,41056953-41057067,41057150-41057404,
41057531-41058618
Length = 788
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +3
Query: 543 FTEKSIRRAFIRKVYAILMCQLMVTMGFIALFLYHRPTKVWVAQNPFMFW 692
FT S+R AFI +Y L+ Q M F++ + PT + + +FW
Sbjct: 297 FTSASVRLAFITIIYPCLILQYMGQAAFLSKNILDMPTGFYDSIPGPIFW 346
>11_06_0192 +
21128298-21128829,21129341-21129407,21131169-21131211,
21131301-21131367,21131613-21131770,21131863-21132057
Length = 353
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +3
Query: 558 IRRAFIRKVYAILMCQLMVTMGFIALFLYHRPTKVWVAQNPFMFW 692
+R AF+RKVY IL Q VT + RP + A W
Sbjct: 79 LRWAFVRKVYCILALQFAVTAAIAVVAWAVRPIPRFFAAGSLASW 123
>03_06_0292 -
32886148-32886354,32886997-32887154,32887265-32887378,
32887660-32887924
Length = 247
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +3
Query: 558 IRRAFIRKVYAILMCQLMVTMGFIALFLYHRPTKVW 665
+R AFIRKVY I+ QL+VT+ P K +
Sbjct: 32 LRWAFIRKVYVIVSVQLLVTVAVAGAVNLVEPIKTF 67
>04_04_0824 -
28399144-28399385,28400193-28400312,28400422-28400453,
28400531-28400625,28400713-28400786,28400883-28401018,
28401096-28401333,28401508-28401555,28401593-28401780,
28401862-28401983,28402061-28402226,28402321-28402443,
28403068-28403139,28403244-28403351,28404212-28404328,
28404458-28404596,28404702-28404808,28404904-28405013,
28405141-28405274,28405348-28405497,28405571-28405791,
28405868-28406677,28410261-28410473
Length = 1254
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/46 (36%), Positives = 18/46 (39%)
Frame = +2
Query: 563 QGFHPKGVRDPDVSADGDDGFHRSVPVPPTDQSLGGPKSLHVLGWP 700
QG H G P+ G G H PP Q GG S H G P
Sbjct: 150 QGSHHPGGGPPEYQGRGGPGSHHPGGGPPDYQGRGGSGSHHPGGGP 195
>04_04_0662 - 27051508-27051828,27051878-27053438,27054333-27054733
Length = 760
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = -1
Query: 641 QEQSDETHRHHQLTHQDRVHLSDESPAYRFFSEIETLDFA 522
+E+ + H++++ T + R D +YRFF+E+E L A
Sbjct: 149 KEKFENVHKYYKRTKEGRAGRQD-GKSYRFFTELEALHAA 187
>08_01_1022 +
10323158-10323393,10323486-10323531,10325887-10325941,
10326027-10326107,10326189-10326400
Length = 209
Score = 29.1 bits (62), Expect = 3.8
Identities = 27/98 (27%), Positives = 43/98 (43%)
Frame = +1
Query: 274 KADRTLRAGRTRKVDRTRKVDRTHRVEVTRKVELTLQEERIPRVEHTRRADMRPLSLASN 453
KA +L AGR ++ R VD L+L EE++ R E +A +RP + +
Sbjct: 66 KAAASLFAGR--QLSRCSGVDPDEHPIKKEFERLSLWEEKLNRFEDWDKAPLRPTTTVNT 123
Query: 454 LHMAALVTVNRAISHRTTQSAKMAKSRVSISLKNLYAG 567
AA + ++ H TT K + +S Y+G
Sbjct: 124 --QAAARFIGHSLPHLTTDQ-KRSMQAISRGEGGSYSG 158
>03_05_0306 - 22956474-22956980
Length = 168
Score = 28.7 bits (61), Expect = 5.1
Identities = 31/99 (31%), Positives = 39/99 (39%)
Frame = +2
Query: 248 KLREHVSESRRTVPSGRGVPARWTVPARWTVPTGWRLPARWSLPSRRSVSPGWSIPAGRI 427
K +EH + SRR P+ G P RW + R PT W + + S R GW G
Sbjct: 56 KAQEHGAWSRRASPASWGEP-RW-LARRPAFPT-WESSRKEASGSSRPGGMGWQKREGG- 111
Query: 428 CAPSAWLPTCIWRRWLR*TGLYPTERLSRRRWRSQGFRF 544
P W R L TG E + R S+ RF
Sbjct: 112 -DPGGWRRA---RPHLGDTGTEVGEEAAHRGGMSEAGRF 146
>12_02_0065 -
13109652-13110746,13110843-13111762,13139462-13139528,
13139607-13139675,13139877-13140020,13140100-13140171,
13140316-13140387,13140466-13140558,13140655-13140726,
13140809-13140925
Length = 906
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = +2
Query: 302 VPARWTVPARWTVPTGWRLPARWSLPSRRS 391
V A PAR P+ WR P R S PSRRS
Sbjct: 6 VAAAAAAPARSRWPS-WRTPPRSSTPSRRS 34
>08_02_0969 -
23126389-23126670,23126764-23126947,23127017-23127834,
23127953-23128642
Length = 657
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = +2
Query: 581 GVRDPDVSADGDDGFHRSVPVPPTDQSLGGPKSLHVLGWP 700
G DP AD +DG P PP+ G +S + P
Sbjct: 549 GTLDPMADADANDGSQMQTPAPPSPAGEGRRRSPRLAAKP 588
>10_08_0888 - 21317163-21317687,21318044-21318153,21318258-21318408
Length = 261
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +2
Query: 230 KLEGPTKLREHVSESRRTVPSGRGVPARW 316
+L+GP LR VSES +TV + + +PA W
Sbjct: 221 RLQGPFSLRM-VSESGQTVIAHQVIPANW 248
>08_01_0445 +
3942820-3943030,3943719-3943853,3943942-3944150,
3944258-3944464
Length = 253
Score = 27.9 bits (59), Expect = 8.8
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +2
Query: 515 RRWRSQGFRFH*KIYTQGFHPKGVRDPDVSADGDDGFHRSVPVPPTD 655
RR +GFR F+P G D +S D DD P PPT+
Sbjct: 42 RRAAEEGFRLR-----VAFNPSGNFDLSLSTDQDDAPQVEPPPPPTE 83
>05_05_0033 + 21737075-21737721,21737819-21738134,21738463-21739722
Length = 740
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 495 GYSPVHRNQRRHMQVGSQAEGAHIRP 418
G + H +QRR Q Q +G H+RP
Sbjct: 156 GRAASHESQRRRQQQQQQLKGRHLRP 181
>05_03_0122 -
8669422-8669609,8669759-8670111,8670669-8670824,
8670999-8671168,8672133-8672297,8673190-8673384,
8673506-8673634,8673759-8673980
Length = 525
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 275 RRTVPSGRGVPARWTVPARWTVPTGWRLPARWSLPS 382
R+T PS P+ + +P R GW + W LPS
Sbjct: 28 RKTPPSPPPPPSSFGLPVRAVCLGGWLVTEGWILPS 63
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,782,369
Number of Sequences: 37544
Number of extensions: 427666
Number of successful extensions: 1380
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1375
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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