Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1d20
         (734 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70753-10|CAD44125.1|  296|Caenorhabditis elegans Hypothetical p...    37   0.017
Z70753-1|CAD44126.1|  296|Caenorhabditis elegans Hypothetical pr...    37   0.017
Z70753-11|CAA94766.1|  244|Caenorhabditis elegans Hypothetical p...    36   0.023
U23147-2|AAC46688.1|  918|Caenorhabditis elegans Hypothetical pr...    29   3.4  
AF039052-4|AAF98630.1|  981|Caenorhabditis elegans Proteasome re...    29   4.5  
U28740-4|AAA68319.2|  276|Caenorhabditis elegans Temporarily ass...    28   6.0  
AC006834-6|AAF40004.1|  233|Caenorhabditis elegans Hypothetical ...    28   7.9  

>Z70753-10|CAD44125.1|  296|Caenorhabditis elegans Hypothetical
           protein F40F9.1a protein.
          Length = 296

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 17/59 (28%), Positives = 32/59 (54%)
 Frame = +3

Query: 519 DGEVKGFDFTEKSIRRAFIRKVYAILMCQLMVTMGFIALFLYHRPTKVWVAQNPFMFWG 695
           DG+   F F++K++R AF+RKV++++   L +      +   H  T   V +N  ++ G
Sbjct: 67  DGKYS-FQFSDKTVRAAFVRKVFSLVFIMLCIVAAVTVIPWVHDDTMRMVRRNSALYLG 124


>Z70753-1|CAD44126.1|  296|Caenorhabditis elegans Hypothetical
           protein F40F9.1b protein.
          Length = 296

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 17/59 (28%), Positives = 32/59 (54%)
 Frame = +3

Query: 519 DGEVKGFDFTEKSIRRAFIRKVYAILMCQLMVTMGFIALFLYHRPTKVWVAQNPFMFWG 695
           DG+   F F++K++R AF+RKV++++   L +      +   H  T   V +N  ++ G
Sbjct: 67  DGKYS-FQFSDKTVRAAFVRKVFSLVFIMLCIVAAVTVIPWVHDDTMRMVRRNSALYLG 124


>Z70753-11|CAA94766.1|  244|Caenorhabditis elegans Hypothetical
           protein F40F9.2 protein.
          Length = 244

 Score = 36.3 bits (80), Expect = 0.023
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +3

Query: 543 FTEKSIRRAFIRKVYAILMCQLMVTMGFIALFLYHRPTKVWVAQNPFMFW 692
           F+ +++R AF+RKV+ ++     +T  F  + +   P + WV  N   FW
Sbjct: 22  FSSQTVRAAFVRKVFMLVTIMFAITAAFCVIPMVSEPFQDWVKNN---FW 68


>U23147-2|AAC46688.1|  918|Caenorhabditis elegans Hypothetical
           protein C18H9.3 protein.
          Length = 918

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
 Frame = +1

Query: 304 TRKVDRTRKVDRTHRVEVTRKVELTL-----QEERIPRVEHTRRADMRPLSLASNLHMAA 468
           +++V  T+      +VE  +K E TL     +EER  +VE  + A ++    ASN+  AA
Sbjct: 718 SKEVKHTKTAPWAAKVEAPQKSEKTLLEIQKEEERKFKVEQEKNAKLKAKEQASNITSAA 777

Query: 469 LVTVNRA 489
            +  +++
Sbjct: 778 AIAGDKS 784


>AF039052-4|AAF98630.1|  981|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 1 protein.
          Length = 981

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 324 GTVHLAGTPRPEGTVRLDSDTCSRNLVGPSSLVFP 220
           G V++AGTP P GT  +      R+L G +S   P
Sbjct: 651 GNVNVAGTPAPTGTPAVAPAAPRRDLPGAASAATP 685


>U28740-4|AAA68319.2|  276|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 132 protein.
          Length = 276

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +3

Query: 510 VGEDGEVKG-FDFTEKSIRRAFIRKVYAILMCQLMVTMGFIALFLYHRP 653
           V  DG + G      + IR AF+RKV  I+  QL+ T+G  A  +Y+ P
Sbjct: 52  VDADGILPGCVGKANRMIRIAFLRKVLGIVGFQLLFTIGICAA-IYNIP 99


>AC006834-6|AAF40004.1|  233|Caenorhabditis elegans Hypothetical
           protein ZK973.9 protein.
          Length = 233

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -1

Query: 641 QEQSDETHRHHQLTHQDRVHLSD 573
           Q ++DE  +H QL H++ +HLS+
Sbjct: 32  QSRADEAIKHQQLLHRNLLHLSN 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,824,097
Number of Sequences: 27780
Number of extensions: 356903
Number of successful extensions: 1123
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)