Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt1d19
(650 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpa... 314 3e-86
AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily a... 283 6e-77
U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase su... 64 1e-10
AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical ... 49 3e-06
AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical ... 49 3e-06
AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical ... 45 5e-05
AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical ... 30 1.2
AF039719-12|AAB96758.1| 293|Caenorhabditis elegans Hypothetical... 30 1.6
AF016682-2|AAO38604.1| 891|Caenorhabditis elegans Argonaute (pl... 30 1.6
AF016682-1|AAB66187.2| 910|Caenorhabditis elegans Argonaute (pl... 30 1.6
Z69663-5|CAA93512.2| 1002|Caenorhabditis elegans Hypothetical pr... 29 2.2
Z69661-8|CAA93496.2| 1002|Caenorhabditis elegans Hypothetical pr... 29 2.2
DQ178241-1|ABA18180.1| 1010|Caenorhabditis elegans argonaute-lik... 29 2.2
AF016657-2|AAB93652.1| 366|Caenorhabditis elegans Hypothetical ... 29 2.9
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ... 29 2.9
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ... 28 5.0
Z82266-13|CAB05187.1| 1080|Caenorhabditis elegans Hypothetical p... 28 6.6
Z81128-8|CAB03402.1| 811|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z68295-2|CAA92588.1| 1080|Caenorhabditis elegans Hypothetical pr... 28 6.6
U53341-1|AAC69110.3| 727|Caenorhabditis elegans Hypothetical pr... 28 6.6
AL031635-6|CAA21044.1| 761|Caenorhabditis elegans Hypothetical ... 28 6.6
Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical pr... 27 8.7
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 27 8.7
U10438-11|AAL50321.1| 335|Caenorhabditis elegans Hypothetical p... 27 8.7
>U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpase
protein 12 protein.
Length = 491
Score = 314 bits (772), Expect = 3e-86
Identities = 147/176 (83%), Positives = 164/176 (93%)
Frame = +2
Query: 119 HVLAVSRDFISQPRLTYKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVS 298
H A+ R++ + PRL Y+TV GVNGPLVIL++VKFP+FSEIV++ L DG+ RSGQVLE+S
Sbjct: 13 HKSAIIRNYNTNPRLIYQTVCGVNGPLVILNDVKFPQFSEIVKITLPDGSKRSGQVLEIS 72
Query: 299 GSKAVVQVFEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDF 478
+KAVVQVFEGTSGIDAKNT+CEFTGDILRTPVSEDMLGR+FNGSGKPIDKGPP+LAEDF
Sbjct: 73 KNKAVVQVFEGTSGIDAKNTICEFTGDILRTPVSEDMLGRIFNGSGKPIDKGPPVLAEDF 132
Query: 479 LDIQGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQI 646
LDI GQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSA+GLPHNEIAAQI
Sbjct: 133 LDINGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSASGLPHNEIAAQI 188
>AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily
assigned gene nameprotein 300 protein.
Length = 501
Score = 283 bits (695), Expect = 6e-77
Identities = 133/176 (75%), Positives = 156/176 (88%)
Frame = +2
Query: 119 HVLAVSRDFISQPRLTYKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVS 298
H A+ +++ ++P+LTY+TV GVNGPLVI+ VKFP F+EIV++ L +G +R GQVLE S
Sbjct: 25 HRTALIQNYSTKPKLTYQTVFGVNGPLVIVHNVKFPMFNEIVKITLPNGQIRMGQVLESS 84
Query: 299 GSKAVVQVFEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDF 478
+KAVVQVFEGT+G+DAK T CEFTGDI R+PVS DMLGR+FNGSGKPIDKGPP+L ED+
Sbjct: 85 KNKAVVQVFEGTTGVDAKFTTCEFTGDIFRSPVSLDMLGRIFNGSGKPIDKGPPVLPEDY 144
Query: 479 LDIQGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQI 646
LDI GQPINP++RIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQI
Sbjct: 145 LDINGQPINPFNRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQI 200
>U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase
subunit protein 2 protein.
Length = 538
Score = 63.7 bits (148), Expect = 1e-10
Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 4/116 (3%)
Frame = +2
Query: 284 VLEVS---GSKAVVQV-FEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 451
+LEVS G V + +GT G+ + + TGD ++ PV + LGR+ N G+PID+
Sbjct: 105 ILEVSQHLGDNVVRCIAMDGTEGLVRGQPVAD-TGDPIKIPVGPETLGRIMNVIGEPIDE 163
Query: 452 GPPILAEDFLDIQGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGL 619
PI +++F I + +E++ TGI +D++ A+G KI +F AG+
Sbjct: 164 RGPIASKNFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGV 219
>AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical
protein H28O16.1d protein.
Length = 511
Score = 48.8 bits (111), Expect = 3e-06
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Frame = +2
Query: 278 GQVLEVSGSKAVVQVFEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPID-KG 454
G + + V VF G + + + + TG I+ PV + +LGRV + G PID KG
Sbjct: 62 GMAMNLDVDNVGVVVF-GNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKG 120
Query: 455 PPILA-EDFLDIQGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQK 592
P A ++++ I P R+ E + TG+ A+D + I RGQ+
Sbjct: 121 PIANARRSRVEVKAPGIIP--RLSVREPMVTGVKAVDSLVPIGRGQR 165
>AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical
protein H28O16.1a protein.
Length = 538
Score = 48.8 bits (111), Expect = 3e-06
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Frame = +2
Query: 278 GQVLEVSGSKAVVQVFEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPID-KG 454
G + + V VF G + + + + TG I+ PV + +LGRV + G PID KG
Sbjct: 89 GMAMNLDVDNVGVVVF-GNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKG 147
Query: 455 PPILA-EDFLDIQGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQK 592
P A ++++ I P R+ E + TG+ A+D + I RGQ+
Sbjct: 148 PIANARRSRVEVKAPGIIP--RLSVREPMVTGVKAVDSLVPIGRGQR 192
>AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical
protein Y49A3A.2 protein.
Length = 606
Score = 44.8 bits (101), Expect = 5e-05
Identities = 25/94 (26%), Positives = 51/94 (54%)
Frame = +2
Query: 164 TYKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVSGSKAVVQVFEGTSGI 343
+Y V GV+GP+V +++ E+V++ + G+++ + G A +QV+E TSG+
Sbjct: 6 SYGFVYGVSGPVVTAEKMAGSAMYELVRVGHQELV---GEIIRLEGDYATIQVYEETSGV 62
Query: 344 DAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPI 445
+ + TG L + ++G +F+G +P+
Sbjct: 63 TIGDPVLR-TGKPLSVELGPGIMGSIFDGIQRPL 95
>AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical
protein H28O16.1c protein.
Length = 503
Score = 30.3 bits (65), Expect = 1.2
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
Frame = +2
Query: 275 SGQVLEVSGSKAVVQVFEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPID-K 451
+G+VL + + +V+ G I A+ + EF I ++ D+ G PID K
Sbjct: 56 TGKVLSIGDG--IARVY-GLKNIQAEE-MVEFDSGIKGMAMNLDVDNVGVVVLGNPIDGK 111
Query: 452 GPPILAE-DFLDIQGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQK 592
GP A ++++ I P R+ E + TG+ A+D + I RGQ+
Sbjct: 112 GPIANARRSRVEVKAPGIIP--RLSVREPMVTGVKAVDSLVPIGRGQR 157
>AF039719-12|AAB96758.1| 293|Caenorhabditis elegans Hypothetical
protein K04F10.7 protein.
Length = 293
Score = 29.9 bits (64), Expect = 1.6
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +1
Query: 124 PGSLQGLHFPAQAHLQDCVWCKRSSRHLG 210
PG+ Q A H Q CVWC + R G
Sbjct: 39 PGTCQYCKLNAAFHDQKCVWCSHAERKFG 67
>AF016682-2|AAO38604.1| 891|Caenorhabditis elegans Argonaute
(plant)-like gene protein2, isoform b protein.
Length = 891
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 433 GTVEHATQHVFRDRCTKNVTRELAECVL 350
G+V+H VF D+C + V RE+ C++
Sbjct: 72 GSVQHYQIDVFPDKCPRRVNREVIGCLI 99
>AF016682-1|AAB66187.2| 910|Caenorhabditis elegans Argonaute
(plant)-like gene protein2, isoform a protein.
Length = 910
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 433 GTVEHATQHVFRDRCTKNVTRELAECVL 350
G+V+H VF D+C + V RE+ C++
Sbjct: 91 GSVQHYQIDVFPDKCPRRVNREVIGCLI 118
>Z69663-5|CAA93512.2| 1002|Caenorhabditis elegans Hypothetical
protein F48F7.1 protein.
Length = 1002
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 433 GTVEHATQHVFRDRCTKNVTRELAECVL 350
GT++H V D+C + V RE+ C++
Sbjct: 165 GTIQHYQVDVTPDKCPRRVNREIISCLI 192
>Z69661-8|CAA93496.2| 1002|Caenorhabditis elegans Hypothetical
protein F48F7.1 protein.
Length = 1002
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 433 GTVEHATQHVFRDRCTKNVTRELAECVL 350
GT++H V D+C + V RE+ C++
Sbjct: 165 GTIQHYQVDVTPDKCPRRVNREIISCLI 192
>DQ178241-1|ABA18180.1| 1010|Caenorhabditis elegans argonaute-like
protein.
Length = 1010
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = -2
Query: 433 GTVEHATQHVFRDRCTKNVTRELAECVL 350
GT++H V D+C + V RE+ C++
Sbjct: 173 GTIQHYQVDVTPDKCPRRVNREIISCLI 200
>AF016657-2|AAB93652.1| 366|Caenorhabditis elegans Hypothetical
protein C16C4.6 protein.
Length = 366
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 437 CRNR*TRDPTCLQRPVYEECHP*TRRVCSSRQYLMSL 327
C N + P+CLQ P+ E+C ++ V S LM L
Sbjct: 328 CSNNLRKFPSCLQLPIPEKCLKLSKLVLPSGSRLMKL 364
>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
protein H43E16.1 protein.
Length = 1203
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/89 (21%), Positives = 39/89 (43%)
Frame = -3
Query: 474 SSAKIGGPLSMGLPEPLNTRPNMSSETGVRRMSPVNSQSVFFASIPDVPSNTWTTALEPL 295
SS+ +G P+P + ++ S TG S ++ +PS+T T
Sbjct: 743 SSSTMGSTAGSSSPQPTASSTSVPSSTGATSSGSTVGSSTMGSTQSSLPSSTMTNT--GS 800
Query: 294 TSST*PERRVPSASFSCTISENLGNLTSS 208
T ST + S+++ + +E + + T++
Sbjct: 801 TGSTVTNQLASSSTYGASSTEPIASSTAN 829
>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
protein Y53C10A.10 protein.
Length = 1582
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -3
Query: 327 SNTWTTALEPLTSST*PERRVPSASFSCTISENLGNLTSS--KMTRGPFTP 181
S+T +T E TSST P ++ + T+S TSS TRG F P
Sbjct: 877 SSTGSTTSESTTSSTEPPTTQEESNTTTTLSSTTPFTTSSTESFTRGGFIP 927
>Z82266-13|CAB05187.1| 1080|Caenorhabditis elegans Hypothetical
protein F23B2.12 protein.
Length = 1080
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 89 VISHAQATKEHVLAVSRDFISQPRLTYKTVSGVNGPLVILDE 214
+I +A T S+ + R + VSGV GP V+LD+
Sbjct: 55 LIGNASGTFTQRYLYSQQYTLHQRTAFLYVSGVEGPNVVLDD 96
>Z81128-8|CAB03402.1| 811|Caenorhabditis elegans Hypothetical
protein T23D8.9a protein.
Length = 811
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +1
Query: 499 HQPMVTYLPRGDDPNWYLRY*CDELYCPWSEDPHL 603
HQ + + PR + P + C+ + W +DPH+
Sbjct: 278 HQVVQMFCPRENGPQDFRELICNLISLNWQKDPHM 312
>Z68295-2|CAA92588.1| 1080|Caenorhabditis elegans Hypothetical
protein F23B2.12 protein.
Length = 1080
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 89 VISHAQATKEHVLAVSRDFISQPRLTYKTVSGVNGPLVILDE 214
+I +A T S+ + R + VSGV GP V+LD+
Sbjct: 55 LIGNASGTFTQRYLYSQQYTLHQRTAFLYVSGVEGPNVVLDD 96
>U53341-1|AAC69110.3| 727|Caenorhabditis elegans Hypothetical
protein F49E10.5 protein.
Length = 727
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +3
Query: 432 PANPSTRVPQSWPRTSWTSRVSPSTHGHVSTQ 527
PAN S+R S P T+ +S VSP +GHV T+
Sbjct: 594 PANRSSRSSPS-PHTNKSS-VSPGNNGHVKTE 623
>AL031635-6|CAA21044.1| 761|Caenorhabditis elegans Hypothetical
protein Y47D3B.9 protein.
Length = 761
Score = 27.9 bits (59), Expect = 6.6
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +2
Query: 209 DEVKFPKFSEIVQLKLADGTLRSGQVLEVSGSKAVVQVFEGTSGIDAKNTL 361
D+ F +FSE + S V++ S SK FEG+SG DA +T+
Sbjct: 231 DDGIFNRFSEKLAKMARRKQQESTLVIDPSHSKDDSAFFEGSSGSDAPSTI 281
>Z66498-2|CAA91291.2| 419|Caenorhabditis elegans Hypothetical
protein M195.2 protein.
Length = 419
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +3
Query: 405 TCWVACS-TVPANPSTRVPQSWP 470
TC C+ TV + PST+ PQS+P
Sbjct: 301 TCNEVCAPTVASQPSTQAPQSYP 323
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
K06A9.1b protein.
Length = 2232
Score = 27.5 bits (58), Expect = 8.7
Identities = 22/77 (28%), Positives = 33/77 (42%)
Frame = -3
Query: 423 NTRPNMSSETGVRRMSPVNSQSVFFASIPDVPSNTWTTALEPLTSST*PERRVPSASFSC 244
+T+P MS+ G S V S + S VPS+T T TSS + +S +
Sbjct: 1890 STQPQMSTSQGSSAGSTVASSTAGLVSTSTVPSSTGTMG---STSSGTVGSTISESSTAA 1946
Query: 243 TISENLGNLTSSKMTRG 193
+ S G+ + T G
Sbjct: 1947 STSSQTGSTVTIGSTSG 1963
>U10438-11|AAL50321.1| 335|Caenorhabditis elegans Hypothetical
protein B0280.1a protein.
Length = 335
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = -2
Query: 247 LYDLRELGELDFIQDDERTVYTRHSLVSEPGLGNEVPGDCQDMFLGRLGV 98
L L LG L+FI D + E G + PGDC D F G+
Sbjct: 252 LASLAILGRLNFIDSDAMKKFIYACQDDETGGFADRPGDCADPFHTVFGI 301
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,464,002
Number of Sequences: 27780
Number of extensions: 387920
Number of successful extensions: 1215
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1200
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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