Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1d17
         (682 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    25   0.51 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.0  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.0  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   2.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   4.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   4.7  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   6.2  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    22   6.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.2  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = -2

Query: 186 VIVITVCPFSYCIKRM*II---TKMVMHLIN 103
           + V T+  FSYCI  + II   +++V H++N
Sbjct: 210 IFVATIFTFSYCIPMILIIYYYSQIVSHVVN 240


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -1

Query: 628 RTEANQQPTYIHH 590
           RT    QPTY HH
Sbjct: 30  RTRTKLQPTYFHH 42


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -1

Query: 628 RTEANQQPTYIHH 590
           RT    QPTY HH
Sbjct: 30  RTRTKLQPTYFHH 42


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +2

Query: 554 GWILISTSVNIPMMYIGRLLVGFGSGMVGAPARVYTCEVSQPH 682
           G + I T+  +    +G L+VG  +G++      Y   + Q H
Sbjct: 280 GGVAIGTAAGMMCQPVGTLIVGALAGLLSVLGYKYITPLIQKH 322


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 556 MDSDFDLCKYSHDVYR*AAGWLRFGYGRRPSQGV 657
           +   F L +YS  +++  +  L  GYGR P Q +
Sbjct: 317 LQDSFWLEQYSWALFKAMSHMLCIGYGRFPPQSL 350


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 556 MDSDFDLCKYSHDVYR*AAGWLRFGYGRRPSQGV 657
           +   F L +YS  +++  +  L  GYGR P Q +
Sbjct: 285 LQDSFWLEQYSWALFKAMSHMLCIGYGRFPPQSL 318


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 283 RPRESSETGLRLVFG*FGHH 342
           RP E+S   L +VFG   HH
Sbjct: 22  RPAENSSQPLAVVFGLSLHH 41


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -2

Query: 372 AEKP-KAIPVLMVPKLAKNEAKTCFR 298
           A KP K++    V KLAKN  K+C +
Sbjct: 17  ALKPVKSMSADQVEKLAKNMRKSCLQ 42


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 172 CDNNDGREERISAVHQEWSTG 234
           C +NDG+   ++   QE STG
Sbjct: 11  CPDNDGKMVDLTQCLQESSTG 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,542
Number of Sequences: 438
Number of extensions: 4455
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)