Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt1d15
(741 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi... 245 6e-66
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom... 96 5e-21
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar... 33 0.043
SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyc... 31 0.17
SPBC3F6.03 |trr1|caf4|thioredoxin reductase Trr1|Schizosaccharom... 30 0.30
SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr ... 29 0.53
SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic enzyme|Schizosaccha... 29 0.92
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi... 28 1.2
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica... 28 1.6
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 28 1.6
SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p... 27 2.8
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 27 3.7
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 27 3.7
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy... 27 3.7
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|... 26 4.9
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.9
SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr... 26 6.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 6.5
SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces pomb... 26 6.5
>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
Dld1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 245 bits (599), Expect = 6e-66
Identities = 116/201 (57%), Positives = 148/201 (73%), Gaps = 2/201 (0%)
Frame = +2
Query: 143 RIATRQYATTHDADLVVIGSGPGGYVAAIKAAQLGMKVVSVEKDPTLGGTCLNVGCIPSK 322
R+ + + + + DL VIG GPGGYVAAI+ AQLG+K + VEK TLGGTCLNVGCIPSK
Sbjct: 34 RLYSAKASGNGEYDLCVIGGGPGGYVAAIRGAQLGLKTICVEKRGTLGGTCLNVGCIPSK 93
Query: 323 ALLHNSHLYHMAKHDFKQRGIETGEVTFDFKKMMEYKANAVKGLTGGIAMLFQKNKVNLV 502
ALL+NSH+YH KHD K+RGI+ V+ + +MM+ K ++VK LT GI LF+KNKV
Sbjct: 94 ALLNNSHIYHTVKHDTKRRGIDVSGVSVNLSQMMKAKDDSVKSLTSGIEYLFKKNKVEYA 153
Query: 503 KGVGTIVAPNKVEVHGEKGV--ETVNTKNILIASGSEVTPFPGVTFDEKQIITSTGALSL 676
KG G+ + P + V G G +T+ KN +IA+GSEV PFPGVT DEK+I++STGALSL
Sbjct: 154 KGTGSFIDPQTLSVKGIDGAADQTIKAKNFIIATGSEVKPFPGVTIDEKKIVSSTGALSL 213
Query: 677 ESVPKKMLVIGAGVIGLELGS 739
VPKKM V+G G+IGLE+GS
Sbjct: 214 SEVPKKMTVLGGGIIGLEMGS 234
>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 464
Score = 95.9 bits (228), Expect = 5e-21
Identities = 67/191 (35%), Positives = 101/191 (52%), Gaps = 7/191 (3%)
Frame = +2
Query: 182 DLVVIGSGPGGYVAAIKAAQLGMKVVSVEKDPTLGGTCLNVGCIPSKALLHNSHLYHMAK 361
D +VIG G GG +A +AA+ G KV +E LGGTC+N GC+P K + + + L K
Sbjct: 9 DYLVIGGGSGGLASARRAAKHGAKVALIEASGRLGGTCVNYGCVPKKIMWNIADLVAKMK 68
Query: 362 HDFKQRGIETGEV-TFDFKKMMEYKANAVKGLTGGI-AMLFQKNKVNLVKGVGTIVAPNK 535
KQ G ++ +FD+ M++ K +A G GI K+ V + G + V+P +
Sbjct: 69 -TAKQNGFPNSQLGSFDW-GMIKRKRDAYIGRLNGIYERNVNKDGVAYISGHASFVSPTE 126
Query: 536 --VEVHGEKGVETVNTKNILIA-SGSEVTP--FPGVTFDEKQIITSTGALSLESVPKKML 700
V+++ G + + K ILIA G + P PG + I S G LES PK++
Sbjct: 127 VAVDMNDGSGTQVFSAKYILIAVGGHPIWPSHIPGAEYG----IDSDGFFELESQPKRVA 182
Query: 701 VIGAGVIGLEL 733
++GAG I +EL
Sbjct: 183 IVGAGYIAVEL 193
>SPAC1093.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 33.1 bits (72), Expect = 0.043
Identities = 20/49 (40%), Positives = 28/49 (57%)
Frame = -3
Query: 586 NIFGINSLNTLLSVYFNFIWGNYSSYTFDKINLVLLKEHCNTSCEAFNS 440
NI G+ TLLS + ++ NY+ Y+ DKI + KE NT + FNS
Sbjct: 756 NISGLADNYTLLSKHDRAMYNNYADYSPDKIKEIKEKE-LNTYNDYFNS 803
>SPBC713.12 |erg1||squalene monooxygenase Erg1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 457
Score = 31.1 bits (67), Expect = 0.17
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 170 THDADLVVIGSGPGGYVAAIKAAQLGMKVVSVEKD 274
T DAD+++IG+G G + G KV+ +E+D
Sbjct: 3 TQDADIIIIGAGITGCALGAALGRQGRKVLVLERD 37
>SPBC3F6.03 |trr1|caf4|thioredoxin reductase
Trr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 30.3 bits (65), Expect = 0.30
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +2
Query: 170 THDADLVVIGSGPGGYVAAIKAAQLGMKVVSVE 268
TH+ +V+IGSGP G+ AAI A+ +K V E
Sbjct: 2 THNK-VVIIGSGPAGHTAAIYLARGELKPVMYE 33
>SPAC17A2.05 |||fumerate reductase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 29.5 bits (63), Expect = 0.53
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = +2
Query: 116 PTFRSGSLVRIATRQYATTHDADLVVIGSGPGGYVAAIKAAQLGMKVVSVEKDPTLGG 289
P+ S S +T ++ +VIG G G A LG V+ ++K+ GG
Sbjct: 18 PSTNSASFFSTLRFNMSTANNTQAIVIGGGLAGLSATNTILDLGGNVLLLDKNTAFGG 75
>SPBC26H8.01 |thi2|nmt2|thiazole biosynthetic
enzyme|Schizosaccharomyces pombe|chr 2|||Manual
Length = 328
Score = 28.7 bits (61), Expect = 0.92
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Frame = +2
Query: 125 RSGSLVRIATRQYATTHD----ADLVVIGSGPGGYVAA--IKAAQLGMKVVSVEKDPTLG 286
R ++ R TR+Y + D +D+V++G+G G AA I + +K+ +E G
Sbjct: 55 RESTVSRAMTRRYFSDLDKYAESDIVIVGAGSAGLTAAYYIGTRRPDLKIAIIEASVAPG 114
Query: 287 G 289
G
Sbjct: 115 G 115
>SPAC20G8.04c |||mitochondrial electron transfer
flavoprotein-ubiquinone
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 176 DADLVVIGSGPGGYVAAIKAAQLGMK 253
D D+ ++G+GP G AAI+ Q K
Sbjct: 90 DVDVCIVGAGPAGLSAAIRIKQQAAK 115
>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
modification enzyme|Schizosaccharomyces pombe|chr
2|||Manual
Length = 666
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +2
Query: 137 LVRIATRQYATTHDA--DLVVIGSGPGGYVAAIKAAQLGMKVVSVEK 271
+ R R + T+ + ++VVIG G G AA A++LG K + K
Sbjct: 1 MFRTTKRYFCTSFNRRKNVVVIGGGHAGVEAAAAASRLGAKTTLLTK 47
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 185 LVVIGSGPGGYVAAIKAAQLGMKVVSVEKDPTLGG 289
+ +IGSGP G AA + + G VV E+ GG
Sbjct: 1758 VAIIGSGPAGLAAADQLNRAGHHVVIYERADRPGG 1792
>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 27.1 bits (57), Expect = 2.8
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -1
Query: 321 FDGIHPTLRQVPPKVGSFSTETTFMPSWAALIAATYP 211
FDG+ L+++P ++ SFST + L +P
Sbjct: 245 FDGVEYALKKIPLRLRSFSTSSNIFRESRTLARLNHP 281
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 26.6 bits (56), Expect = 3.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 658 DWSTFLGVSTEKNVGDWSWSYRFG 729
+W T+ G +T N+ WS S R+G
Sbjct: 892 EWQTYDGNNTYCNLSGWSQSSRYG 915
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 26.6 bits (56), Expect = 3.7
Identities = 17/65 (26%), Positives = 34/65 (52%)
Frame = -3
Query: 556 LLSVYFNFIWGNYSSYTFDKINLVLLKEHCNTSCEAFNSISFIFHHLFEVKCNFTSFNTP 377
L +V+ I+GNY + + IN LL + N ++ + + F ++CN + FN
Sbjct: 1930 LHAVHNYAIYGNYL-HLEEYINKKLLLINPNEEPDSLLFYALAYDLKFLIRCNQSQFNCD 1988
Query: 376 LLEVM 362
+L+++
Sbjct: 1989 ILQLL 1993
>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 385
Score = 26.6 bits (56), Expect = 3.7
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = -1
Query: 324 AFDGIHPTLRQVPPKVGSFSTETTFMPSWAALIAATYPPGPEPITTRSASC 172
A+ G + P G FS+ A+ YPP PE +++ S+SC
Sbjct: 204 AYFGSKDLKQSAPLFTGIFSSLDDIPTYSASDYLPAYPPNPEGMSSTSSSC 254
>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 348
Score = 26.2 bits (55), Expect = 4.9
Identities = 9/20 (45%), Positives = 17/20 (85%)
Frame = +2
Query: 668 LSLESVPKKMLVIGAGVIGL 727
++ E+ P+ ++++GAGVIGL
Sbjct: 1 MTKENKPRDIVIVGAGVIGL 20
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -1
Query: 273 SFSTETTFMPSWAALIAATYPPGPEPITTRSASCV 169
S S T+ + S A+++++TY GP IT S S V
Sbjct: 159 SSSMTTSGLSSSASIVSSTYRDGPSIITLVSTSYV 193
>SPBC336.02 |||18S rRNA dimethylase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 25.8 bits (54), Expect = 6.5
Identities = 20/82 (24%), Positives = 33/82 (40%)
Frame = +2
Query: 38 LRILYFNPKIQKKLLNMGYKFLKLASPTFRSGSLVRIATRQYATTHDADLVVIGSGPGGY 217
+R+ N ++ N +KF K LV A +D V+ GPG
Sbjct: 4 IRVRNNNAASDAEVRNTVFKFNKDFGQHILKNPLVAQGIVDKADLKQSD-TVLEVGPGTG 62
Query: 218 VAAIKAAQLGMKVVSVEKDPTL 283
++ + KV++VE DP +
Sbjct: 63 NLTVRMLEKARKVIAVEMDPRM 84
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 6.5
Identities = 27/98 (27%), Positives = 41/98 (41%), Gaps = 3/98 (3%)
Frame = -1
Query: 741 TEPSSKPITPAPITNIFFGTDSKESA-PVDVIICFSSKVTPGKGVTSDPEAIRIFLVLT- 568
T +S PI P ++ TD+ S P C +S P G ++ P + T
Sbjct: 256 TSSTSIPIPPTSTSS----TDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTS 311
Query: 567 -VSTPFSPCTSTLFGATIVPTPLTRLTLFF*KSIAIPP 457
STP P +++ G + P P T + S +IPP
Sbjct: 312 STSTPPPPASTSSTGTSSSPLPSTSTSCT--TSTSIPP 347
Score = 25.8 bits (54), Expect = 6.5
Identities = 31/128 (24%), Positives = 44/128 (34%), Gaps = 7/128 (5%)
Frame = -1
Query: 741 TEPSSKPITPAPITNIFFGTDSKESAPVDVIICFSSKVTPGKGVTSDPEAIRIFLVLTVS 562
T SS P P + GT S P C +S P G ++ P + T S
Sbjct: 308 TSTSSTSTPPPPASTSSTGTSSSP-LPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSS 366
Query: 561 TPFSPCTSTLFGATIVPTPLTRLTLFF*KSIAIP-------PVRPLTALALYSIIFLKSN 403
T P ++ +PL + S +IP PV P S +N
Sbjct: 367 TSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTN 426
Query: 402 VTSPVSIP 379
T+ S+P
Sbjct: 427 CTTSTSVP 434
>SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 376
Score = 25.8 bits (54), Expect = 6.5
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 128 SGSLVRIATRQYATTHDADLVVIGSGPGGYVAAIKAAQLGMKVVS 262
S +++ T++Y H LVVIG+G G V A +K++S
Sbjct: 325 SDNIISFTTKRY---HTRPLVVIGAGAGAAVTAAGVLGDMIKIMS 366
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,176,412
Number of Sequences: 5004
Number of extensions: 68763
Number of successful extensions: 249
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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