Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1d08
         (322 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0053 + 8602142-8603581                                           31   0.27 
01_02_0015 + 10191793-10191957,10192085-10192229,10192331-101924...    28   1.9  
01_06_0304 + 28340976-28342512,28342774-28342799,28343268-28343999     27   4.3  

>10_05_0053 + 8602142-8603581
          Length = 479

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = -3

Query: 131 YVIKVKIF*RRYLAALRIGYLSPVQRPRKSSNDRSTIATPPRF 3
           Y+ + K   RRY+ AL +G++   QR +++S+  S    PPRF
Sbjct: 99  YICRRKPPSRRYVGALAVGFVQ--QRRQENSSSSSGAPPPPRF 139


>01_02_0015 +
           10191793-10191957,10192085-10192229,10192331-10192419,
           10193009-10193063,10193607-10193692,10194006-10194065
          Length = 199

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 22  IVDLSLDDFRGLCTGDK 72
           +V  ++D+FR LCTGDK
Sbjct: 90  VVPKTVDNFRALCTGDK 106


>01_06_0304 + 28340976-28342512,28342774-28342799,28343268-28343999
          Length = 764

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 23  LWTYHWMTSAVSVPETSIQSLGPLNTVSKI 112
           LW  HW  S++S    + QS  PL  +  +
Sbjct: 34  LWMAHWARSSISPEPQNGQSCSPLKEIDDV 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,776,387
Number of Sequences: 37544
Number of extensions: 95749
Number of successful extensions: 188
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)