Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt1d01
(820 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc... 117 2e-27
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa... 28 1.4
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch... 27 3.2
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 27 4.2
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch... 27 4.2
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 27 4.2
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 27 4.2
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl... 26 5.6
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 26 7.4
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 25 9.8
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 9.8
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||... 25 9.8
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 25 9.8
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 25 9.8
>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 117 bits (281), Expect = 2e-27
Identities = 71/232 (30%), Positives = 115/232 (49%), Gaps = 17/232 (7%)
Frame = +1
Query: 127 KVFNFGAGPAKLPEEVYEIIKNELTNFENSGISLLETSHRSSTYMKLNVEIQDVVRNLLD 306
+V NF AGPA + V E + NF+ G+ + E SHRS + + R L +
Sbjct: 6 EVVNFAAGPAAMITSVVEEFGKDFVNFQGLGMGVAEISHRSKQGSGIVTSAESNFRKLYN 65
Query: 307 VPDNYKVXXXXXXXXXXXXXVPLNLI---------SRTGTADYVVTGAWSXXXXXXXXXY 459
+P+N+ + N+ +++ A+Y++TGAWS
Sbjct: 66 IPENFHILFMQGGGTEQFAACLYNVYAHHALKNGNAKSLVANYIITGAWSKKAYAEAERL 125
Query: 460 G-KVNLVLPPTD---KYEDIPD--QTKWNLDPNASYVHICTNETIHGVEFDFIPDT--KG 615
G ++ + + KY +P+ K+ D S V+ C NET+HGVEF+ P KG
Sbjct: 126 GFPCHVAVDMKELAGKYGSLPEDKDLKFTPDGETSLVYYCDNETVHGVEFNEPPTNIPKG 185
Query: 616 VPLIADMSSNIMSKKVDVSKFGVIYAGAQKNIGTSGVALVIVREDLLNQALP 771
+ D+SSN +S+K+D +K +I+AGAQKN G +G+ +V VR+ +L + P
Sbjct: 186 AIRVCDVSSNFISRKIDFTKHDIIFAGAQKNAGPAGITVVFVRDSVLARPTP 237
>SPAC3C7.06c |pit1||serine/threonine protein kinase
Pit1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 650
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 538 WDQGSILSDQVCLHIYLSVVAPNLLSHIFSPPW 440
WD+ +L+++ L I L +AP +FSPPW
Sbjct: 275 WDRAELLANK--LGISLPKMAPLDFGDLFSPPW 305
>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 703
Score = 27.1 bits (57), Expect = 3.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -3
Query: 662 TFFDIMFEDISAIKGTPFVS 603
TF+DI+FED+ + +PF S
Sbjct: 540 TFWDILFEDVPGVFQSPFQS 559
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 187 KNELTNFENSGISLLETSHRSSTYMKLNVEIQDVVRNLL 303
+N+ + +SLL S S++Y L + D+V N+L
Sbjct: 1197 RNQWSQVRALALSLLSDSLNSTSYRLLGISCSDMVSNIL 1235
>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 679
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +1
Query: 187 KNELTNFENSGISLLETSHRSSTYMKLNVEIQDVVRNLLDVPDNY 321
+++ T ++ SG+ L T HR KLN + ++ +LD+ + +
Sbjct: 211 ESQSTMYKKSGLKTLVTLHRDLGIDKLNQDEVTIITAVLDLREKH 255
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 686 ITPNFETSTFFDIMFEDISAIKGT 615
ITPN TS FFD++ +D G+
Sbjct: 1438 ITPNLLTSQFFDVLTKDALYTNGS 1461
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 26.6 bits (56), Expect = 4.2
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 166 EEVYEIIKNELTNFENSGISLLETSHRSSTYMKLNVEIQDVV 291
E V + N + + + ++LL T H S T KLNV D++
Sbjct: 604 ESVDSVTCNYVLSSSKNPMNLLFTLHNSITDGKLNVHCNDII 645
>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 26.2 bits (55), Expect = 5.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 749 SSLTMTSATPDVPIFF*APAYITPNFETSTF 657
+ L++ S+TP P+ P Y TP+ S F
Sbjct: 427 NQLSIPSSTPSTPLSDNGPTYSTPHSSLSNF 457
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 382 LSLKEQLQIDQDPHQLKTALCSCPVHLISFAQ 287
L+LK+ + I + H L A+CS ISF Q
Sbjct: 352 LTLKDNICIIDEAHNLIDAICSMHSSSISFRQ 383
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 25.4 bits (53), Expect = 9.8
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +1
Query: 184 IKNELTNFENSGISLLETSHRSSTYMKLNVEIQDVVRNLLDVPDNYKV 327
+ EL E S LLE + R S + ++ +++L DVP K+
Sbjct: 2671 VLTELAKHEGSSELLLECAWRISDWSNNRESLEVAIKSLSDVPTPRKL 2718
>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 9.8
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -3
Query: 707 FF*APAYITPNFETSTFFDIMFEDISAIKGTPFVSGMKSNS 585
FF A PN S F IM +++ +KG + M ++S
Sbjct: 287 FFLQIAVAIPNGGLSNFSSIMLKNLGYVKGKALLMNMPTSS 327
>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 565
Score = 25.4 bits (53), Expect = 9.8
Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 6/60 (10%)
Frame = -1
Query: 397 YQFWILSLKEQLQIDQDPHQLKTALCSCPVHLISFAQHP------EFRHLASCMLKNDDL 236
YQFWI L + ++ + L P L SF P F +L C+ KN +
Sbjct: 168 YQFWIERLLHGITEKEELQHIYKILTLTPASLDSFQNRPPYIGITTFPNLQHCIKKNQPI 227
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 25.4 bits (53), Expect = 9.8
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = -3
Query: 710 IFF*APAYITPNFETSTFFDIMFEDISAIKGTPFVS--GMKSNSTPCIVSLVQICTYEAL 537
IFF IT + + +++D +K + G+ S+ CI+S + T E
Sbjct: 136 IFFLGNFKITNSMSAAMLTFKVYDDSKRLKASSMADYIGVLSSKLACIISKPAVKTPEIY 195
Query: 536 GSRFHFV 516
FH++
Sbjct: 196 SKLFHYL 202
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 25.4 bits (53), Expect = 9.8
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = +3
Query: 642 KHYVEES*CFKVWGDICWCSKEYWY 716
+H V F+++ + WC +YWY
Sbjct: 195 EHAVAPFFVFQIFCCVLWCLDDYWY 219
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,329,672
Number of Sequences: 5004
Number of extensions: 71012
Number of successful extensions: 227
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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