Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1d01
         (820 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0398 + 3092577-3093857                                          175   3e-44
09_03_0003 + 11396076-11396386,11398803-11398869,11399194-113996...    29   3.4  
08_02_1478 - 27386280-27387046,27388154-27388201,27388631-27388724     29   3.4  
03_06_0756 - 36032432-36033871                                         28   7.8  

>03_01_0398 + 3092577-3093857
          Length = 426

 Score =  175 bits (427), Expect = 3e-44
 Identities = 95/226 (42%), Positives = 131/226 (57%), Gaps = 4/226 (1%)
 Frame = +1

Query: 130 VFNFGAGPAKLPEEVYEIIKNELTNFENSGISLLETSHRSSTYMKLNVEIQDVVRNLLDV 309
           V+NF AGPA LP  V +  + EL ++  SG+S++E SHR   +     + +  +R LL V
Sbjct: 65  VYNFAAGPATLPLSVLQRAQAELVDYRGSGMSIMEMSHRGKEFDAAIKKAEADLRALLAV 124

Query: 310 PDNYKVXXXXXXXXXXXXXVPLNLI-SRTGTADYVVTGAWSXXXXXXXXXYGKVNLVLPP 486
           PD ++V              PLNL  S +  AD+VV+G+WS         +   ++    
Sbjct: 125 PDTHEVLFLQGGATSQFAAAPLNLCASPSDPADFVVSGSWSDKAFKEAKKFSAASVAWSG 184

Query: 487 TD-KYEDIPDQTKWNLDPNASYVHICTNETIHGVEFDFIPDTKGVP--LIADMSSNIMSK 657
            D KY  +P       +P A ++HIC+NETIHGVEF   P+ K     L+ADMSSN  SK
Sbjct: 185 KDGKYTSLPPFDAIEQNPEARFLHICSNETIHGVEFKDYPEPKNKSGILVADMSSNFCSK 244

Query: 658 KVDVSKFGVIYAGAQKNIGTSGVALVIVREDLLNQALPTCPSLLDW 795
            VDVS+FG+IYAGAQKN+G SGV + IVR+DL+  A P  P +LD+
Sbjct: 245 PVDVSRFGLIYAGAQKNVGPSGVTIAIVRKDLVGSAQPITPVMLDY 290


>09_03_0003 +
           11396076-11396386,11398803-11398869,11399194-11399698,
           11400903-11401038,11401186-11401257,11401891-11401923,
           11401924-11402047,11402387-11402437,11403437-11403563,
           11404230-11404298,11404369-11404486,11404755-11405151
          Length = 669

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +1

Query: 472 LVLPPTDKYEDIP-DQTKWNLDPNASYVHICTNETI 576
           L+LPP  +Y D P D+  W    ++  ++I TN+TI
Sbjct: 120 LLLPPFQRYPDDPYDRLWWPWQGSSRLLNISTNQTI 155


>08_02_1478 - 27386280-27387046,27388154-27388201,27388631-27388724
          Length = 302

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 682 VIYAGAQKNIGTSGVALVIVREDLLNQALPTCPSLLD 792
           V++   +K  GT+G+   I    LL+Q  P CP+  D
Sbjct: 56  VVHFTRKKEAGTAGLDSAIAISSLLSQGSPECPTFPD 92


>03_06_0756 - 36032432-36033871
          Length = 479

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = -3

Query: 506 MSSYLSVGGSTKFTFPYFFASLAALADHAPVT 411
           + SYLS  G    T P  FAS  ALA H P+T
Sbjct: 162 LKSYLSAQG---VTLPTLFASALALALHVPLT 190


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,276,809
Number of Sequences: 37544
Number of extensions: 398098
Number of successful extensions: 915
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)