Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1d01
         (820 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81516-3|CAB04204.1|  370|Caenorhabditis elegans Hypothetical pr...   192   3e-49
Z79598-4|CAB01868.2|  745|Caenorhabditis elegans Hypothetical pr...    33   0.19 
Z48544-2|CAA88437.1|  766|Caenorhabditis elegans Hypothetical pr...    30   2.3  
AF003150-1|AAB54215.1|  997|Caenorhabditis elegans Hypothetical ...    29   3.0  
Z66499-5|CAE17941.1|  143|Caenorhabditis elegans Hypothetical pr...    28   7.0  

>Z81516-3|CAB04204.1|  370|Caenorhabditis elegans Hypothetical
           protein F26H9.5 protein.
          Length = 370

 Score =  192 bits (468), Expect = 3e-49
 Identities = 92/221 (41%), Positives = 131/221 (59%), Gaps = 1/221 (0%)
 Frame = +1

Query: 136 NFGAGPAKLPEEVYEIIKNELTNFENSGISLLETSHRSSTYMKLNVEIQDVVRNLLDVPD 315
           NF AGPAKLPEEV   ++ E  NF N G+S++E SHRS  +  L  E   ++R L++VPD
Sbjct: 9   NFAAGPAKLPEEVLLKMQEEQLNFNNLGVSVIEMSHRSKEFGALLNETISLIRELMNVPD 68

Query: 316 NYKVXXXXXXXXXXXXXVPLNLISRTGTADYVVTGAWSXXXXXXXXXYGKVNLVLPPTDK 495
           N+++             +PLNL      ADY+VTGAWS         Y  V  V  P+  
Sbjct: 69  NFEILFMQGGGTGQFAAIPLNLKGDHEHADYIVTGAWSSKAADEAGKYINVKKVFQPSKP 128

Query: 496 YEDIPDQTKWNLDPNASYVHICTNETIHGVEF-DFIPDTKGVPLIADMSSNIMSKKVDVS 672
           Y  +PDQ  W  D  A+Y++ C NET+HG+EF    P++  VPL+AD+SSN M++  D  
Sbjct: 129 YVTVPDQENWVHDEKAAYLYYCANETVHGIEFTPTAPESHNVPLVADVSSNFMARPFDFK 188

Query: 673 KFGVIYAGAQKNIGTSGVALVIVREDLLNQALPTCPSLLDW 795
             GV++ GAQKN+G +G+ +VIVR+DL+ +     PS+  +
Sbjct: 189 DHGVVFGGAQKNLGAAGLTIVIVRKDLIGKQQAITPSVFSY 229


>Z79598-4|CAB01868.2|  745|Caenorhabditis elegans Hypothetical
           protein C44H4.4 protein.
          Length = 745

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 23/72 (31%), Positives = 36/72 (50%)
 Frame = +1

Query: 487 TDKYEDIPDQTKWNLDPNASYVHICTNETIHGVEFDFIPDTKGVPLIADMSSNIMSKKVD 666
           TD++ D+ +Q    L    +  HICT+     +E D  P TKG P + D+S N +   +D
Sbjct: 587 TDEHSDVKNQ----LINGLNKFHICTSPV--WIEIDHGPQTKGFPFLHDVSFNGI-LAID 639

Query: 667 VSKFGVIYAGAQ 702
             K  V+   A+
Sbjct: 640 KDKVNVLVEPAE 651


>Z48544-2|CAA88437.1|  766|Caenorhabditis elegans Hypothetical
           protein ZK945.3 protein.
          Length = 766

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 604 DTKGVPLIADMSSNIMSKKVDVSKFGVIYAGAQKNI 711
           D + +  +A+  SN  SKK    ++G +YAG  +N+
Sbjct: 566 DKREITFLAEGDSNPHSKKTQKDRYGQLYAGITENL 601


>AF003150-1|AAB54215.1|  997|Caenorhabditis elegans Hypothetical
           protein T05E7.3 protein.
          Length = 997

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -2

Query: 159 FSRSSAKIKHFRHFHLFIYLINSYTTLFYQTTLSFSDVSRYDVVLS 22
           F+RSS +++      LFI + N   + F +++LS+ DV     VLS
Sbjct: 717 FARSSGELEKNYIAELFIKITNPKASRFSESSLSWKDVKMSKTVLS 762


>Z66499-5|CAE17941.1|  143|Caenorhabditis elegans Hypothetical
           protein T01B7.9 protein.
          Length = 143

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 780 GTCR*SLIQKILSNNDKRYPRCTNILLSTSIYHPKL 673
           G C   +  K L NN      C N+ +S+S+Y P L
Sbjct: 59  GVCYGDICVKSLVNNHYVSKGCENLTISSSVYEPHL 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,275,805
Number of Sequences: 27780
Number of extensions: 385858
Number of successful extensions: 1063
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)