Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1c24
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces pombe...    31   0.14 
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   9.4  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    25   9.4  

>SPCC613.04c |rng3||UCS-domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 746

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 1/107 (0%)
 Frame = +1

Query: 325 IPVLIDIIRR-IEDNPDVNMDLRQLSALLLHTYRQDGIEFHQPEGNLAISSNVIPFAPTF 501
           I +L DI++  +E N   +   +Q+  L+L +     I    P+   A   N   +    
Sbjct: 11  IDLLNDILKNSVESNVFSDYQKKQIVTLILKSKISTAIVLLSPKSTAASEWN---YLCNL 67

Query: 502 HSFHRHRLLLTRLIPSNLQTLGNTTVNSVLKCTLHHMLSTTVDARLR 642
              H   L +  ++P+NLQT+     + VL   L+       DA LR
Sbjct: 68  QDLHECVLCVDTILPANLQTIAKRIFSLVLLPPLNDWCKQLRDAFLR 114


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 502 HSFHRHRLLLTRLIPSNLQTLGNTTVNSVLKCTLH 606
           H  +R RL   R+    L+ L    VNS ++ TLH
Sbjct: 597 HVINRFRLANDRIHEIELKPLSFNAVNSYVQATLH 631


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 104 FVNDKRV*CTVLKRFKCGVFSNRSSRCIGYHSLW 205
           FVND R     L R K GV    + + +  H+LW
Sbjct: 780 FVNDPRRLNVALTRAKYGVIVLGNPKVLAKHALW 813


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,337,206
Number of Sequences: 5004
Number of extensions: 70836
Number of successful extensions: 191
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)