Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1c24
         (789 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025461-5|AAB70992.1|  297|Caenorhabditis elegans Hypothetical ...    29   3.8  
Z92777-9|CAJ58495.1|  396|Caenorhabditis elegans Hypothetical pr...    29   5.0  

>AF025461-5|AAB70992.1|  297|Caenorhabditis elegans Hypothetical
           protein M01D1.8 protein.
          Length = 297

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
 Frame = +1

Query: 232 QLTAQSSI-APELRECYFDPILLNRNNLPPTTIPVLIDIIRRIEDNPDVNMDLRQLSALL 408
           QL A   I  PE +  +  P   + N+L  T+    ID+   +    D+N+ L+ L+A L
Sbjct: 164 QLVALRQIWTPEYQHVFL-PADYSLNDLLCTSCSC-IDLRDSLLTEKDINVFLKHLAAGL 221

Query: 409 LHTYRQDGIEFHQPEGNLAISSNVIPFAPT 498
           L   +  G   H+P  + ++    IPF  T
Sbjct: 222 LPELQTFGFNSHRPNYDRSMILKGIPFEDT 251


>Z92777-9|CAJ58495.1|  396|Caenorhabditis elegans Hypothetical
           protein C17H1.14 protein.
          Length = 396

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = +1

Query: 628 DARLRGD--ESNCNQLSQYRALRTGRSISDDVEILDTSLLKTNDKNGQ 765
           D  +R D  E+  N+  Q R  R G S+SD +EIL+ S+    D++G+
Sbjct: 225 DKAVRADILENKFNRAVQ-RTKRAGCSLSDAMEILNESIGSLQDEDGE 271


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,662,379
Number of Sequences: 27780
Number of extensions: 399209
Number of successful extensions: 892
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)