Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1c22
         (747 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0321 + 24091997-24092530                                         30   1.7  
12_02_1069 + 25801309-25801433,25802429-25802620,25803130-258031...    29   3.0  
04_04_1047 - 30408962-30409105,30409204-30409304,30409733-30409820     29   3.9  
02_05_1056 - 33804717-33804871,33805352-33805418,33805508-338055...    28   6.9  
04_04_1634 + 34937087-34937198,34937652-34937790,34938263-349383...    28   9.1  

>05_05_0321 + 24091997-24092530
          Length = 177

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 22/76 (28%), Positives = 36/76 (47%)
 Frame = +2

Query: 65  RVRPKESNSF*LLKNALRRKSARQGSEKRNA*SRPRRRLKMKLKSTDRSVKGSSKNLKPS 244
           + RP  S+     + A    S RQ  ++  A +R  RRL+ +   +  S  GS   +  +
Sbjct: 81  QARPSSSSE---QEEAAEAASRRQQQQQAAAAAR-ERRLRRRRSDSRGSCGGSGDGVLLN 136

Query: 245 TWVPGKVLRPRSMPRP 292
            +VPG + R  + PRP
Sbjct: 137 FYVPGLLTRSMTTPRP 152


>12_02_1069 +
           25801309-25801433,25802429-25802620,25803130-25803159,
           25803426-25803500,25803599-25804373,25804549-25804614,
           25804746-25804811,25804898-25805140,25805407-25805502
          Length = 555

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 205 VCTFQLHLEPPPWPALGVSLFASL 134
           V  FQ  + PPPWPA G + F  +
Sbjct: 231 VAAFQSRMMPPPWPARGKAEFGDV 254


>04_04_1047 - 30408962-30409105,30409204-30409304,30409733-30409820
          Length = 110

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 24/108 (22%), Positives = 40/108 (37%)
 Frame = +1

Query: 58  DMASQTQGIQQLLAAEKRAAEKVSXXXXXXXXXXXXXXXXXXDEVXXXXXXXXXXXXXXX 237
           D   +  GIQQLLAAE+ A + V+                   E+               
Sbjct: 2   DANRRQSGIQQLLAAEQEAQQIVNAARAAKSARLRQAKEEAEREIAEYRAQMEAEFQRKV 61

Query: 238 AKHMGTREGVAAKIDAETKVKIEEMNKMVQTQKEAVIKDVLNLVYDIK 381
           A+  G       +++ ET  KI ++ +   +    VI+ +L  V  +K
Sbjct: 62  AESSGDSGANVKRLEQETAEKIAQLKQQAASISPEVIQMLLRHVTTVK 109


>02_05_1056 -
           33804717-33804871,33805352-33805418,33805508-33805576,
           33806414-33806548,33806609-33806680,33807281-33807375,
           33807778-33807859,33807949-33807999,33808107-33808187,
           33808534-33808575,33808705-33808803,33809044-33809115,
           33809166-33809270
          Length = 374

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +1

Query: 523 CRQVFLEPT*LKKNTARRRK*NVKVQFFCQVIYCMRNQLGTIPSVENSLR 672
           C Q FLE   + +  ++ R  + K++F  QV   ++N L TI SV   +R
Sbjct: 104 CEQFFLEMMKVPRVESKLRILSFKIKFLTQVA-DLKNSLNTINSVAEEVR 152


>04_04_1634 +
           34937087-34937198,34937652-34937790,34938263-34938334,
           34938414-34938546,34938591-34938730,34939478-34939585,
           34939650-34939720,34940297-34940545,34940618-34940823,
           34940894-34941026,34941099-34941101,34941136-34941293,
           34941420-34941683,34941869-34942114
          Length = 677

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 604 FCQVIYCMRNQL-GTIPSVENSLR*FKILNMKKNK 705
           F Q +Y  RN L GTIP    SLR  ++L++  N+
Sbjct: 104 FLQELYLDRNMLFGTIPKQLGSLRNLRVLDLGVNR 138


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,586,567
Number of Sequences: 37544
Number of extensions: 294708
Number of successful extensions: 722
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)