Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1c21
         (642 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0588 + 17595299-17596151,17597519-17597665,17598562-175988...    30   1.8  
07_03_0382 + 17470508-17470807,17471449-17474517                       29   3.1  
07_01_1203 - 11464142-11464324,11464422-11464484,11464685-114665...    28   5.5  
05_01_0119 + 820566-820739,822708-822737,823153-823266,823341-82...    28   7.2  
01_07_0132 - 41298184-41298558,41298648-41298729,41298850-412989...    28   7.2  

>04_03_0588 +
           17595299-17596151,17597519-17597665,17598562-17598837,
           17599108-17599805
          Length = 657

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = +1

Query: 418 SFDPNDMSSWYFHGMTRKEATDLL--LNETESGVFLVRDSKSIVGNYVLCVKEAGRVSNY 591
           +FDP  +     HGM  KEA   L  L+   S   L RD KS   N +L      +VS++
Sbjct: 408 NFDPTRVLGSGGHGMVYKEAAGALYYLHSAASVSVLHRDVKS--SNILLDSNYTAKVSDF 465

Query: 592 IIDRIVSPDGSVLF 633
              R++  D + +F
Sbjct: 466 GASRLIPNDQTHVF 479


>07_03_0382 + 17470508-17470807,17471449-17474517
          Length = 1122

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = -1

Query: 558 KNVVSNNGLRIPD-QKHATLSLIKEQICSFFPRHAV-KVPAAHVI-GVEGTPHSGIRHTW 388
           + ++S N L++    +  T   + +QI SF       K+ +  V  G  GT   G+RH W
Sbjct: 466 EELISRNFLQLETGNRDITRCTMHDQIRSFLQFFVKDKICSGEVKPGTNGTSSEGLRHVW 525

Query: 387 -SGTSRT 370
            SGTS T
Sbjct: 526 ISGTSTT 532


>07_01_1203 -
           11464142-11464324,11464422-11464484,11464685-11466515,
           11467240-11468036
          Length = 957

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +2

Query: 272 NRVLHKNVLLKVSWKKMLNSDFRQ*RSFTKTRRVLDVPDQVWRIPEWGV 418
           N+  H + L K+S + +++    + R + + RR L V D +W I  W +
Sbjct: 238 NKQKHMSDLAKLSERHLID----EIREYLENRRYLVVLDDIWEISTWDI 282


>05_01_0119 +
           820566-820739,822708-822737,823153-823266,823341-823433,
           823521-823586,824076-824174,824480-824559,825039-825151,
           825600-825688,825955-826041,826128-826130,826285-826383
          Length = 348

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -1

Query: 603 AIDYIVRHPTCFFD 562
           A+D++ RHP CF+D
Sbjct: 267 AVDFMFRHPDCFYD 280


>01_07_0132 -
           41298184-41298558,41298648-41298729,41298850-41298977,
           41299059-41299157,41299279-41299434,41300709-41300783,
           41301962-41302137,41303210-41303252,41303336-41303503,
           41303584-41303731,41306316-41306587
          Length = 573

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = -1

Query: 534 LRIPDQKHATLSLIKEQICSFFPRHAVKVPAAHVIGV---EGTPHSGIRHTWSGTSRTRL 364
           L+IPD    T  L+ + +C    R A ++ AA ++G+    G   SG   +  G  + R 
Sbjct: 448 LKIPDAPLKTRRLVVK-VCDIVTRRAARLAAAGIVGILKKLGRDGSGAASSGRGRGQPRR 506

Query: 363 VLVKL 349
            +V +
Sbjct: 507 TVVAI 511


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,704,864
Number of Sequences: 37544
Number of extensions: 342040
Number of successful extensions: 896
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)