Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1c16
         (444 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.06c |isd11||iron sulfur cluster assembly protein Isd11|...    59   3e-10
SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         25   5.2  
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    25   5.2  
SPCC1442.13c |||RNA-binding protein, G-pathc type|Schizosaccharo...    25   6.9  
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         25   6.9  
SPCC553.07c |mug40||DinB translesion DNA repair polymerase|Schiz...    25   6.9  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    24   9.1  

>SPBC13G1.06c |isd11||iron sulfur cluster assembly protein
           Isd11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 102

 Score = 59.3 bits (137), Expect = 3e-10
 Identities = 29/84 (34%), Positives = 50/84 (59%)
 Frame = +3

Query: 99  AIPKIQILSLYKLLLRESQKFPNYNFRAYALRRIRDAFKDNKNVSDVKIVKKEFEFGKEN 278
           ++ K  ++ LY+ +L+ S+ FP Y +R Y +RR RD FK+ K  SD    ++  +  ++ 
Sbjct: 2   SVSKQHVVRLYRNILKTSKLFP-YTYREYTIRRTRDKFKELKVESDPAKFEQGIKDSEKL 60

Query: 279 LNVIRRQAAIGNMYKTEKLVIENL 350
           L +I+RQ+ I  MY    LV+E +
Sbjct: 61  LEIIQRQSIINGMYNKRNLVVEGI 84


>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 307 LEICIKQKNLLSKIC-GSFMFIIVYYYETSVMYNVHL 414
           L  C    ++L  IC  SF+++   YY T ++ +V L
Sbjct: 53  LSSCNYALSILHNICLASFLYLSKCYYHTHILTSVRL 89


>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 119 YLYFRYRARHFALLFDKLIKNY 54
           ++YF Y    F  LFD+L  +Y
Sbjct: 262 HMYFNYNYGQFFTLFDRLCSSY 283


>SPCC1442.13c |||RNA-binding protein, G-pathc
           type|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 207

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 313 ICIKQKNLLSKICGSFMFIIVYYYETSVMYNV 408
           + +K+K L + I G F+F   +Y+   +M  +
Sbjct: 176 VAVKEKLLFTIILGKFLFYKEFYFWLLIMMTI 207


>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 118 YYLSINCFSENP 153
           +YLS+NC  ENP
Sbjct: 334 FYLSLNCLIENP 345


>SPCC553.07c |mug40||DinB translesion DNA repair
           polymerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 24.6 bits (51), Expect = 6.9
 Identities = 11/37 (29%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +1

Query: 79  NKAKCLARYLKYKYYLSINC--FSENPRSSLTIISEH 183
           +K++CLA  LK++   ++ C    +N  + L I+++H
Sbjct: 473 SKSRCLAMQLKFQSQNTVPCPVCQKNIENELGILNQH 509


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 24.2 bits (50), Expect = 9.1
 Identities = 8/29 (27%), Positives = 18/29 (62%)
 Frame = +2

Query: 77  IIKRNVWRDT*NTNIISL*IASQRIPEVP 163
           +++R++W +     ++ L  + Q IPE+P
Sbjct: 644 LVERDLWNEDMKNKLVMLDGSIQAIPEIP 672


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,689,418
Number of Sequences: 5004
Number of extensions: 31973
Number of successful extensions: 84
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)