Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1c16
         (444 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    23   1.5  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   3.5  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   3.5  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   3.5  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   3.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   4.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   4.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   4.6  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   4.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   8.0  

>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +1

Query: 349 CGSFMFIIVYYYETSVMYNVHLTNK*Y 429
           CGS + I+  +YE  ++ +V L++  Y
Sbjct: 53  CGSHIIIVGLFYEFGLITHVKLSSDWY 79


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +3

Query: 105 PKIQILSLYKLLLRESQKFPNYNFRAYAL 191
           PKI + SL+   L    +FP   F+  +L
Sbjct: 150 PKIHVFSLHDNKLITMYRFPQNQFKESSL 178


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic
          acetylcholine receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 80 LFDKLIKNYNILIK 39
          L+D L+ NYN LI+
Sbjct: 24 LYDDLLSNYNRLIR 37


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
          acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 80 LFDKLIKNYNILIK 39
          L+D L+ NYN LI+
Sbjct: 24 LYDDLLSNYNRLIR 37


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
          acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 80 LFDKLIKNYNILIK 39
          L+D L+ NYN LI+
Sbjct: 37 LYDDLLSNYNRLIR 50


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic
          acetylcholine receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 80 LFDKLIKNYNILIK 39
          L+D L+ NYN L++
Sbjct: 32 LYDDLLSNYNKLVR 45


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic
          acetylcholine receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 80 LFDKLIKNYNILIK 39
          L+D L+ NYN L++
Sbjct: 32 LYDDLLSNYNKLVR 45


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic
          acetylcholine receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 80 LFDKLIKNYNILIK 39
          L+D L+ NYN L++
Sbjct: 28 LYDDLLSNYNKLVR 41


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 4.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -1

Query: 435 CIILFISQMYIIHYRCFIII 376
           C+I+ I+ + II Y  FII+
Sbjct: 403 CLIVVIALVSIIMYIAFIIL 422


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 291 RRQAAIGNMYKT 326
           RRQ  + NMY+T
Sbjct: 701 RRQVELSNMYRT 712


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,511
Number of Sequences: 438
Number of extensions: 2377
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)