Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt1c10
(752 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 248 7e-67
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr... 226 3e-60
SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom... 41 2e-04
SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces ... 31 0.13
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 30 0.31
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch... 28 1.6
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |... 27 2.2
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 27 2.2
SPCC576.14 |||diphthine synthase |Schizosaccharomyces pombe|chr ... 27 2.9
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po... 27 3.8
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 27 3.8
SPBC1711.04 |||methylenetetrahydrofolate reductase |Schizosaccha... 27 3.8
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom... 27 3.8
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch... 27 3.8
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 27 3.8
SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|ch... 27 3.8
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces... 27 3.8
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe... 27 3.8
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 26 5.0
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 26 5.0
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo... 26 5.0
SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 26 5.0
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 26 6.6
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 26 6.6
SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting prot... 25 8.8
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ... 25 8.8
SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14 |Schizo... 25 8.8
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
3|||Manual
Length = 542
Score = 248 bits (607), Expect = 7e-67
Identities = 128/229 (55%), Positives = 160/229 (69%), Gaps = 4/229 (1%)
Frame = +3
Query: 69 KHRYKNVG-LSADELRRRREEEGVQLRKQKREQQLFKRRN---VNLPGTNAAGAASQEDI 236
+ YK G ADELRRRRE + +++RKQKRE+ L KRRN V P Q+
Sbjct: 13 RQNYKGKGTFQADELRRRRETQQIEIRKQKREENLNKRRNLVDVQEPAEETI-PLEQDKE 71
Query: 237 NISPSDCITPDMVLAVYLDNPEEQVIATQKFRKLLSKEPNPPIDAVIQSGIVPKFIEFLT 416
N + PD++ A+Y D+ E Q+ AT KFRK LSKE NPPI VI +G+VP+F+EFL+
Sbjct: 72 NDLELELQLPDLLKALYSDDIEAQIQATAKFRKALSKETNPPIQKVIDAGVVPRFVEFLS 131
Query: 417 NHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVNVLVGLLSGSTENVCEQAVWALGNI 596
H+N L+FEA+WALTN+ASGSS QT +VV+ AV V V LLS S ++V EQAVWALGNI
Sbjct: 132 -HENNLLKFEASWALTNVASGSSNQTHVVVEANAVPVFVSLLSSSEQDVREQAVWALGNI 190
Query: 597 AGDSPYCRDIVLAAGVLPPLLDILNKYTKLSMTKNAVWTLSNLCRGKNP 743
AGDSP CRD VL GVL PLL+I+ +LSM +N+ WTLSN+CRGKNP
Sbjct: 191 AGDSPMCRDHVLQCGVLEPLLNIIESNRRLSMLRNSTWTLSNMCRGKNP 239
Score = 77.8 bits (183), Expect = 2e-15
Identities = 41/132 (31%), Positives = 70/132 (53%)
Frame = +3
Query: 339 LSKEPNPPIDAVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGA 518
LS N I A+I +GI + +E L H + +Q A ++ NI +G QT+++++ GA
Sbjct: 275 LSDGANEKIQAIIDAGIPRRLVELLM-HPSAQVQTPALRSVGNIVTGDDVQTQVIINCGA 333
Query: 519 VNVLVGLLSGSTENVCEQAVWALGNIAGDSPYCRDIVLAAGVLPPLLDILNKYTKLSMTK 698
++ L+ LLS + V ++A W + NI + V+ A ++PPL+ +L + K
Sbjct: 334 LSALLSLLSSPRDGVRKEACWTISNITAGNSSQIQYVIEANIIPPLIHLLTT-ADFKIQK 392
Query: 699 NAVWTLSNLCRG 734
A W +SN G
Sbjct: 393 EACWAISNATSG 404
Score = 54.4 bits (125), Expect = 2e-08
Identities = 33/132 (25%), Positives = 65/132 (49%)
Frame = +3
Query: 345 KEPNPPIDAVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVN 524
K P P +++ Q ++P + + L +A WA++ ++ G++ + + ++D G
Sbjct: 237 KNPQPDWNSISQ--VIPVLSKLIYTLDEDVL-VDALWAISYLSDGANEKIQAIIDAGIPR 293
Query: 525 VLVGLLSGSTENVCEQAVWALGNIAGDSPYCRDIVLAAGVLPPLLDILNKYTKLSMTKNA 704
LV LL + V A+ ++GNI +++ G L LL +L+ + + K A
Sbjct: 294 RLVELLMHPSAQVQTPALRSVGNIVTGDDVQTQVIINCGALSALLSLLSS-PRDGVRKEA 352
Query: 705 VWTLSNLCRGKN 740
WT+SN+ G +
Sbjct: 353 CWTISNITAGNS 364
>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
2|||Manual
Length = 539
Score = 226 bits (552), Expect = 3e-60
Identities = 125/234 (53%), Positives = 158/234 (67%), Gaps = 6/234 (2%)
Frame = +3
Query: 69 KHRYKNVGL-SADELRRRREEEGVQLRKQKREQQLFKRRNVNLPGTNAAGA---ASQEDI 236
+ R+K+ G+ ADELRR+REE+ +++RKQKRE+ L KRRN+N N A Q +
Sbjct: 10 RSRFKSKGVFKADELRRQREEQQIEIRKQKREESLNKRRNLNAVLQNDIDVEEEADQSQV 69
Query: 237 NISPS-DCITPDMVLAVYLDNPEEQVIATQKFRKLLSKEPNPPIDAVIQSGIVPKFIEFL 413
+ P + V D+ E Q+ A KFRK LSKE +PPID VI G+V +F++FL
Sbjct: 70 QMEQQMKDEFPKLTADVMSDDIELQLGAVTKFRKYLSKETHPPIDQVIACGVVDRFVQFL 129
Query: 414 TNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVNVLVGLLSGSTENVCEQAVWALGN 593
+ + LQFEAAWALTNIASG++ QTRIVVD GAV + LLS ++V EQ VWALGN
Sbjct: 130 ESEHH-LLQFEAAWALTNIASGTTDQTRIVVDSGAVPRFIQLLSSPEKDVREQVVWALGN 188
Query: 594 IAGDSPYCRDIVLAAGVLPPLLDIL-NKYTKLSMTKNAVWTLSNLCRGKNPPTN 752
IAGDS CRD VL GVL PLL+IL + + +SM +NA WTLSNLCRGKNPP N
Sbjct: 189 IAGDSSACRDYVLGNGVLQPLLNILQSSASDVSMLRNATWTLSNLCRGKNPPPN 242
Score = 85.8 bits (203), Expect = 6e-18
Identities = 46/155 (29%), Positives = 82/155 (52%), Gaps = 1/155 (0%)
Frame = +3
Query: 273 VLAVYLDNPEEQVIATQKFR-KLLSKEPNPPIDAVIQSGIVPKFIEFLTNHKNPTLQFEA 449
+LA L + + ++I + LS PN I A++ G P+ +E L++ + +Q A
Sbjct: 252 ILAKLLYSEDVEIIVDACWAISYLSDGPNEKIGAILDVGCAPRLVELLSS-PSVNIQTPA 310
Query: 450 AWALTNIASGSSGQTRIVVDYGAVNVLVGLLSGSTENVCEQAVWALGNIAGDSPYCRDIV 629
++ NI +G+ QT+I++D GA+N LLS EN+ ++A W + NI + +
Sbjct: 311 LRSVGNIVTGTDAQTQIIIDCGALNAFPSLLSHQKENIRKEACWTISNITAGNTQQIQAI 370
Query: 630 LAAGVLPPLLDILNKYTKLSMTKNAVWTLSNLCRG 734
+ + ++PPL+ +L+ Y K A W +SN G
Sbjct: 371 IESNLIPPLVHLLS-YADYKTKKEACWAISNATSG 404
>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 550
Score = 40.7 bits (91), Expect = 2e-04
Identities = 35/105 (33%), Positives = 53/105 (50%)
Frame = +3
Query: 411 LTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVNVLVGLLSGSTENVCEQAVWALG 590
L + +P +Q +AA AL N+AS Q IV A+ L+ LL S + +V +
Sbjct: 259 LMDTSSPKVQCQAALALRNLASDERYQIEIVQS-NALPSLLRLLRSSYLPLILASVACIR 317
Query: 591 NIAGDSPYCRDIVLAAGVLPPLLDILNKYTKLSMTKNAVWTLSNL 725
NI+ P ++ AG L PL+D+L+ + +AV TL NL
Sbjct: 318 NIS-IHPLNESPIIDAGFLRPLVDLLSCTENEEIQCHAVSTLRNL 361
Score = 28.7 bits (61), Expect = 0.94
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = +3
Query: 411 LTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVNVLVGLLSGSTENVCEQAVWALG 590
L K+ +Q A AL N+ + ++V G + VLV LL S +V ++
Sbjct: 175 LAKSKDIRVQRNATGALLNMTHSYENRQQLV-SAGTIPVLVSLLPSSDTDVQYYCTTSIS 233
Query: 591 NIAGDS 608
NIA D+
Sbjct: 234 NIAVDA 239
Score = 26.2 bits (55), Expect = 5.0
Identities = 39/157 (24%), Positives = 65/157 (41%), Gaps = 6/157 (3%)
Frame = +3
Query: 291 DNPEEQVIATQKFRKLL-SKEPNPPIDAVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTN 467
+N E Q A R L S E N A+I++ + K + L ++Q E L
Sbjct: 346 ENEEIQCHAVSTLRNLAASSERNKR--AIIEANAIQK-LRCLILDAPVSVQSEMTACLAV 402
Query: 468 IASGSSGQTRIVVDYGAVNVLVGLLSGSTENVCEQAVWALGNIAGD-SPYCRDIVL---- 632
+A ++ ++ ++G NVL+ L + V + ALGN++ + Y R I
Sbjct: 403 LALSDEFKSYLL-NFGICNVLIPLTDSMSIEVQGNSAAALGNLSSNVDDYSRFIECWDSP 461
Query: 633 AAGVLPPLLDILNKYTKLSMTKNAVWTLSNLCRGKNP 743
A G+ L+ L+ + A WT+ L P
Sbjct: 462 AGGIHGYLVRFLSSEDS-TFAHIAAWTIVQLLEAGVP 497
>SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 332
Score = 31.5 bits (68), Expect = 0.13
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +3
Query: 576 VWALGNIAGDSPYCRDIVLAAGVLPPL 656
V+A+G+I GD P D++ AAGV+ P+
Sbjct: 59 VYAIGDIHGDFPNALDVLSAAGVVSPV 85
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 30.3 bits (65), Expect = 0.31
Identities = 21/83 (25%), Positives = 40/83 (48%)
Frame = +3
Query: 363 IDAVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVNVLVGLL 542
+DA S I+P+ + ++ +H NP++ A AL + AS + I + +N L+ LL
Sbjct: 359 LDAQNSSQILPELLYYINSHPNPSVASTAVKALGDFASAN-----ISMAPSCLNTLLLLL 413
Query: 543 SGSTENVCEQAVWALGNIAGDSP 611
+ +A +L + + P
Sbjct: 414 KSHNSLIVTEAASSLRLLIHNDP 436
>SPAC1006.02 |||WD repeat protein, human GNB1L
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 368
Score = 27.9 bits (59), Expect = 1.6
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +3
Query: 378 QSGIVPKFIEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDY 512
+SG V ++I L N K TL F+A W + A S Q + V+Y
Sbjct: 213 ESGHVVQYICSLENVKTVTLDFKAVWKMV-YAYKSHSQPVLSVEY 256
>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 652
Score = 27.5 bits (58), Expect = 2.2
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +3
Query: 162 QQLFKRRNVNLPGTNAAGAASQEDINISPSDC-ITPDMVLAVYLDNPEEQVIA 317
++ F+R+NV+L T+ G ++ + SDC I + ++L+ P EQVIA
Sbjct: 527 EEAFERKNVHLKSTDIRGFHAKVPQQSNFSDCGIYALHFVELFLETP-EQVIA 578
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 27.5 bits (58), Expect = 2.2
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +3
Query: 69 KHRYKNVGLSADELRRRREEEGVQLRKQKREQQLFKRR 182
K + K A + R+ E++ + +R+Q+RE+ L KRR
Sbjct: 176 KEKEKKKSSDAWKERKDNEKKAMLMRQQRREENLKKRR 213
>SPCC576.14 |||diphthine synthase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 283
Score = 27.1 bits (57), Expect = 2.9
Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 4/88 (4%)
Frame = +3
Query: 135 VQLRKQKREQQLFKRRNVNLPGTNAAGAASQEDINISPS---DCITPD-MVLAVYLDNPE 302
+++++Q E R+ P +A A+Q+ + + + TPD + +AV +
Sbjct: 165 IKVKEQSWENLARGRKVYEPPRYMSASLAAQQMLEVEEDRQENICTPDSLCVAVGRMGSD 224
Query: 303 EQVIATQKFRKLLSKEPNPPIDAVIQSG 386
+QVI ++L + PP+ +V+ G
Sbjct: 225 DQVIFAGTLQELAEHDIGPPLHSVVLVG 252
>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 635
Score = 26.6 bits (56), Expect = 3.8
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +3
Query: 561 VCEQAVWALGNIAGDSPYCRDIVLAAGVLPPLLDILNKYTKLSMTKNAVWTL 716
+C Q + + +GD D+V + V+P L DILNK + W L
Sbjct: 555 ICSQVGFD-DSFSGDDKQVVDVVAPSFVIPRLDDILNKIADKPLYSPDDWEL 605
>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/59 (23%), Positives = 25/59 (42%)
Frame = -1
Query: 569 LAHVLRRATQ*SYQHIYCAIIHYDTSLS*RTRGDVCQRPCRLKL*GWILMVCQEFNKFW 393
LA + + + Y IY ++ ++ G + Q + WIL++ FN FW
Sbjct: 156 LADLFEKKDRGKYMVIYFTVLSIGPGIAPIISGFISQSSIGWQWEFWILLILSGFNLFW 214
>SPBC1711.04 |||methylenetetrahydrofolate reductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 320
Score = 26.6 bits (56), Expect = 3.8
Identities = 18/55 (32%), Positives = 22/55 (40%)
Frame = +3
Query: 348 EPNPPIDAVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDY 512
EPN V S + F+E L H N FE A L S S R+ D+
Sbjct: 8 EPNHSCKVVYASRVAETFVEQLKQHVN---LFEFAPKLVGFLSNSDPAARMYADW 59
>SPBPB2B2.16c |||MFS family membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/59 (23%), Positives = 25/59 (42%)
Frame = -1
Query: 569 LAHVLRRATQ*SYQHIYCAIIHYDTSLS*RTRGDVCQRPCRLKL*GWILMVCQEFNKFW 393
LA + + + Y IY ++ ++ G + Q + WIL++ FN FW
Sbjct: 156 LADLFEKKDRGKYMVIYFTVLSIGPGIAPIISGFISQSSIGWQWEFWILLILSGFNLFW 214
>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/59 (23%), Positives = 25/59 (42%)
Frame = -1
Query: 569 LAHVLRRATQ*SYQHIYCAIIHYDTSLS*RTRGDVCQRPCRLKL*GWILMVCQEFNKFW 393
LA + + + Y IY ++ ++ G + Q + WIL++ FN FW
Sbjct: 156 LADLFEKKDRGKYMVIYFTVLSIGPGIAPIISGFISQSSIGWQWEFWILLILSGFNLFW 214
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 540 LSGSTENVCEQAVWALGNIAGDS 608
+SG+TEN+ E+A+ L IA S
Sbjct: 537 ISGNTENIYERAIVTLSRIASQS 559
>SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 26.6 bits (56), Expect = 3.8
Identities = 10/23 (43%), Positives = 19/23 (82%)
Frame = -2
Query: 748 VGGFLPLHKFDNVQTAFFVIDNF 680
VGG +PLH+ ++++ +FFV ++F
Sbjct: 153 VGG-IPLHELNHLELSFFVFNDF 174
>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3
Query: 54 MSGGHKHRYKNVGLSADELRRRREEEGVQLRKQKREQQ 167
++G HK + + + +L +++ EE + LRK REQ+
Sbjct: 38 LTGFHKRKVERRKHAQVQLEQQKREERLALRKSLREQR 75
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +3
Query: 117 RREEEGVQLRKQKREQQLFKRRNV 188
RR+ VQL +QKRE++L R+++
Sbjct: 48 RRKHAQVQLEQQKREERLALRKSL 71
>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/57 (21%), Positives = 28/57 (49%)
Frame = +3
Query: 204 NAAGAASQEDINISPSDCITPDMVLAVYLDNPEEQVIATQKFRKLLSKEPNPPIDAV 374
N +G ++ +I + + V +DNP+ + +T K+R + P+ P+ ++
Sbjct: 729 NVSGLPAETEIAYHHTLSASNSYVFTDLVDNPDSMLKSTLKYRFVFKFSPSQPLSSL 785
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +3
Query: 672 KYTKLSMTKNAVWTLSNLCRGKN 740
K K S KNA T+S LCRG N
Sbjct: 360 KIVKFSGVKNAGKTVSILCRGAN 382
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 26.2 bits (55), Expect = 5.0
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +3
Query: 411 LTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVNVLVGLLSGSTEN 560
L ++N + + LTN A GSSG + AV+ L+G GS+ N
Sbjct: 473 LFQNRNLLTKLAQSGVLTNAAQGSSGG----LSAAAVSGLIGSFMGSSSN 518
>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 432
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 189 NLPGTNAAGAASQEDINISPSDCITPDMVLAVYLDNPEEQ 308
NLP + AG+A + S +C+T + L LD P ++
Sbjct: 380 NLPNFSEAGSAKSSNFCSSKDNCLTNRLTLNC-LDTPSDE 418
>SPAC9G1.12 |cpd1||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 364
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +3
Query: 69 KHRYKNVGLSADELR--RRREEEGVQLRKQKREQQL 170
K R ++ + D L+ +RR EG + RK +REQ L
Sbjct: 248 KSRIVHIDEAIDRLKEVKRRRIEGFERRKMRREQNL 283
>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
Hip3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1630
Score = 25.8 bits (54), Expect = 6.6
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Frame = +3
Query: 423 KNPTLQFEAAWALTNIASGSSGQTRIVVD--YGAV-NVLVGLLSGSTENV 563
+N + FEAA AL SGS Q ++++ Y + N+ + GS E V
Sbjct: 1247 ENALVHFEAAAALAPTKSGSGSQQALLIEPHYALLSNLSKAAIEGSVEIV 1296
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 96 SADELRRRREEEGVQLRKQKREQQLFKRRNVNLPGTN 206
S +EL+R +EE RK+K+ + K+ + P +
Sbjct: 54 SVEELKRSADEEASVKRKEKKSKHEHKKHKKDKPSAD 90
>SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting protein
1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 209
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 5 NLKYFFFSLHCSVFKYNVWRSQTSLQE 85
+LKY++ S CS F YN + S S E
Sbjct: 146 DLKYWYCS--CSQFSYNAFNSSRSFDE 170
>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 607
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +2
Query: 614 LPRYRPRSWRSPTLA*HFK*VHEIVNDEKCCLDVVE 721
L Y+P + +P+L H+K + + DE+ D V+
Sbjct: 455 LRSYQPGKYNNPSLQWHYKVLQALALDEEIPTDFVD 490
>SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 566
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 237 NISPSDCITPDMVLAVYLDNPEEQVIATQKFRKLLSKEPN 356
N++ S+ + D++ Y D P + RKLL K+ N
Sbjct: 428 NMTFSNILHKDVIFPEYADAPSISSLCKNLIRKLLVKDEN 467
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,954,820
Number of Sequences: 5004
Number of extensions: 58631
Number of successful extensions: 252
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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