Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt1c10
(752 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha ... 186 1e-47
AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alph... 186 1e-47
U80444-4|AAB37790.1| 531|Caenorhabditis elegans Importin alpha ... 152 2e-37
AF326936-1|AAG49386.1| 531|Caenorhabditis elegans importin beta... 152 2e-37
AF040996-1|AAB97172.1| 531|Caenorhabditis elegans importin alph... 152 2e-37
AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alph... 149 2e-36
Z73908-4|CAA98127.2| 447|Caenorhabditis elegans Hypothetical pr... 46 2e-05
Z74043-9|CAA98540.1| 524|Caenorhabditis elegans Hypothetical pr... 34 0.094
AF040997-1|AAB97173.1| 524|Caenorhabditis elegans importin alph... 34 0.094
U23521-8|AAC46810.4| 505|Caenorhabditis elegans Hypothetical pr... 31 0.66
Z70205-1|CAA94117.2| 460|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z83120-3|CAB05587.1| 419|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z83120-2|CAB05586.1| 883|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z54271-4|CAA91034.1| 259|Caenorhabditis elegans Hypothetical pr... 29 2.7
AF016449-14|AAG23991.1| 517|Caenorhabditis elegans Hypothetical... 29 2.7
AC024775-2|AAK68456.1| 452|Caenorhabditis elegans Hypothetical ... 29 2.7
AC024137-2|AAK09075.1| 1603|Caenorhabditis elegans Vitellogenin ... 29 2.7
AC024137-1|AAK09074.1| 1603|Caenorhabditis elegans Vitellogenin ... 29 2.7
X03044-1|CAA26849.1| 1603|Caenorhabditis elegans put. vitellogen... 29 4.7
U42835-3|AAA83587.1| 1603|Caenorhabditis elegans Vitellogenin st... 29 4.7
AF047656-8|AAC05109.2| 340|Caenorhabditis elegans Ligand-gated ... 29 4.7
AF000299-6|AAC47978.1| 297|Caenorhabditis elegans Hypothetical ... 29 4.7
Z35595-5|CAA84636.1| 952|Caenorhabditis elegans Hypothetical pr... 28 6.2
AF036692-5|AAS47681.1| 319|Caenorhabditis elegans Serpentine re... 28 8.2
>U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha
family protein 3 protein.
Length = 514
Score = 186 bits (454), Expect = 1e-47
Identities = 103/231 (44%), Positives = 137/231 (59%), Gaps = 1/231 (0%)
Frame = +3
Query: 54 MSGGHKHRYKNVGLSADELRRRREEEGVQLRKQKREQQLFKRRNVNLPGTNAAGAASQED 233
MS + YKN + +R EE V +RK KRE+ + KRRN+N T +
Sbjct: 1 MSSNRQAYYKN-NAKEQIGKEKRNEEVVSIRKDKREEAISKRRNIN---TQIEDDSETST 56
Query: 234 INISPSDC-ITPDMVLAVYLDNPEEQVIATQKFRKLLSKEPNPPIDAVIQSGIVPKFIEF 410
P D + V A +P EQ+ A Q+ RK+LS + NPPID +I SGI+P ++
Sbjct: 57 TPPGPFDANLLRLTVAAAQSSDPAEQLTAVQQARKMLSTDRNPPIDDLIGSGILPVLVQC 116
Query: 411 LTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVNVLVGLLSGSTENVCEQAVWALG 590
L++ +P LQFEAAWALTNIASG+S QT+ VV+ GAV + + LLS NVCEQ+VWALG
Sbjct: 117 LSS-TDPNLQFEAAWALTNIASGTSEQTQAVVNAGAVPLFLQLLSCGNLNVCEQSVWALG 175
Query: 591 NIAGDSPYCRDIVLAAGVLPPLLDILNKYTKLSMTKNAVWTLSNLCRGKNP 743
NI GD P+ RD L G+L PLL +N + +N W + NLCR K+P
Sbjct: 176 NIIGDGPHFRDYCLELGILQPLLQFINPEIPIGFLRNVTWVIVNLCRCKDP 226
Score = 68.1 bits (159), Expect = 6e-12
Identities = 41/131 (31%), Positives = 71/131 (54%), Gaps = 1/131 (0%)
Frame = +3
Query: 354 NPPIDAVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVNVLV 533
N I VI++ +V + L H + +Q A A+ NI +G+ QT++V+D G + +
Sbjct: 267 NEHIQMVIEAQVVTHLVPLL-GHVDVKVQTAALRAVGNIVTGTDEQTQLVLDSGVLRFMP 325
Query: 534 GLLSGSTENVCEQAVWALGNI-AGDSPYCRDIVLAAGVLPPLLDILNKYTKLSMTKNAVW 710
GLL+ E + ++AVW + NI AG+ +D V AG++P ++ +L++ K A W
Sbjct: 326 GLLAHYKEKINKEAVWFVSNITAGNQQQVQD-VFDAGIMPMIIHLLDR-GDFPTQKEAAW 383
Query: 711 TLSNLCRGKNP 743
+SN+ P
Sbjct: 384 AISNVTISGRP 394
Score = 57.6 bits (133), Expect = 9e-09
Identities = 40/130 (30%), Positives = 68/130 (52%)
Frame = +3
Query: 345 KEPNPPIDAVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVN 524
K+P P AV+++ I+P + L +H++ + + WAL+ + G + ++V++ V
Sbjct: 224 KDPAPS-PAVVRT-ILPA-LSLLIHHQDTNILIDTVWALSYLTDGGNEHIQMVIEAQVVT 280
Query: 525 VLVGLLSGSTENVCEQAVWALGNIAGDSPYCRDIVLAAGVLPPLLDILNKYTKLSMTKNA 704
LV LL V A+ A+GNI + +VL +GVL + +L Y K + K A
Sbjct: 281 HLVPLLGHVDVKVQTAALRAVGNIVTGTDEQTQLVLDSGVLRFMPGLLAHY-KEKINKEA 339
Query: 705 VWTLSNLCRG 734
VW +SN+ G
Sbjct: 340 VWFVSNITAG 349
>AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alpha 3
protein.
Length = 514
Score = 186 bits (454), Expect = 1e-47
Identities = 103/231 (44%), Positives = 137/231 (59%), Gaps = 1/231 (0%)
Frame = +3
Query: 54 MSGGHKHRYKNVGLSADELRRRREEEGVQLRKQKREQQLFKRRNVNLPGTNAAGAASQED 233
MS + YKN + +R EE V +RK KRE+ + KRRN+N T +
Sbjct: 1 MSSNRQAYYKN-NAKEQIGKEKRNEEVVSIRKDKREEAISKRRNIN---TQIEDDSETST 56
Query: 234 INISPSDC-ITPDMVLAVYLDNPEEQVIATQKFRKLLSKEPNPPIDAVIQSGIVPKFIEF 410
P D + V A +P EQ+ A Q+ RK+LS + NPPID +I SGI+P ++
Sbjct: 57 TPPGPFDANLLRLTVAAAQSSDPAEQLTAVQQARKMLSTDRNPPIDDLIGSGILPVLVQC 116
Query: 411 LTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVNVLVGLLSGSTENVCEQAVWALG 590
L++ +P LQFEAAWALTNIASG+S QT+ VV+ GAV + + LLS NVCEQ+VWALG
Sbjct: 117 LSS-TDPNLQFEAAWALTNIASGTSEQTQAVVNAGAVPLFLQLLSCGNLNVCEQSVWALG 175
Query: 591 NIAGDSPYCRDIVLAAGVLPPLLDILNKYTKLSMTKNAVWTLSNLCRGKNP 743
NI GD P+ RD L G+L PLL +N + +N W + NLCR K+P
Sbjct: 176 NIIGDGPHFRDYCLELGILQPLLQFINPEIPIGFLRNVTWVIVNLCRCKDP 226
Score = 68.1 bits (159), Expect = 6e-12
Identities = 41/131 (31%), Positives = 71/131 (54%), Gaps = 1/131 (0%)
Frame = +3
Query: 354 NPPIDAVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVNVLV 533
N I VI++ +V + L H + +Q A A+ NI +G+ QT++V+D G + +
Sbjct: 267 NEHIQMVIEAQVVTHLVPLL-GHVDVKVQTAALRAVGNIVTGTDEQTQLVLDSGVLRFMP 325
Query: 534 GLLSGSTENVCEQAVWALGNI-AGDSPYCRDIVLAAGVLPPLLDILNKYTKLSMTKNAVW 710
GLL+ E + ++AVW + NI AG+ +D V AG++P ++ +L++ K A W
Sbjct: 326 GLLAHYKEKINKEAVWFVSNITAGNQQQVQD-VFDAGIMPMIIHLLDR-GDFPTQKEAAW 383
Query: 711 TLSNLCRGKNP 743
+SN+ P
Sbjct: 384 AISNVTISGRP 394
Score = 57.6 bits (133), Expect = 9e-09
Identities = 40/130 (30%), Positives = 68/130 (52%)
Frame = +3
Query: 345 KEPNPPIDAVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVN 524
K+P P AV+++ I+P + L +H++ + + WAL+ + G + ++V++ V
Sbjct: 224 KDPAPS-PAVVRT-ILPA-LSLLIHHQDTNILIDTVWALSYLTDGGNEHIQMVIEAQVVT 280
Query: 525 VLVGLLSGSTENVCEQAVWALGNIAGDSPYCRDIVLAAGVLPPLLDILNKYTKLSMTKNA 704
LV LL V A+ A+GNI + +VL +GVL + +L Y K + K A
Sbjct: 281 HLVPLLGHVDVKVQTAALRAVGNIVTGTDEQTQLVLDSGVLRFMPGLLAHY-KEKINKEA 339
Query: 705 VWTLSNLCRG 734
VW +SN+ G
Sbjct: 340 VWFVSNITAG 349
>U80444-4|AAB37790.1| 531|Caenorhabditis elegans Importin alpha
family protein 2 protein.
Length = 531
Score = 152 bits (369), Expect = 2e-37
Identities = 92/236 (38%), Positives = 131/236 (55%), Gaps = 8/236 (3%)
Frame = +3
Query: 60 GGHKHRYKNVGLSADELRRRREEEGVQLRKQKREQQLFKRRN---VNLPGTNAAGAASQE 230
GG +YKN+ +ELRRRR E V++RKQK + KRRN V+ G + + E
Sbjct: 19 GGRLQQYKNL-TKHEELRRRRTECSVEIRKQKGADMMMKRRNIVDVDEGGNSESELEEPE 77
Query: 231 DINISPSDC-ITPDMVLAVYLDNPEEQ--VIATQKFRKLLSKEPNPPIDAVIQSGIVPKF 401
I+ S ++ D + A+ +NP E V + RK LSK NPPID VI G++
Sbjct: 78 KISHQQSSTRLSNDEIRAILSNNPSEDDMVRCFESLRKSLSKTKNPPIDEVIHCGLLQAL 137
Query: 402 IEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVNVLVGLLSGSTENVCEQAVW 581
++ L+ +N +Q+EAAWALTNI SGS+ QT V+ G L+ L + + EQA+W
Sbjct: 138 VQALSV-ENERVQYEAAWALTNIVSGSTEQTIAAVEAGVTIPLIHLSVHQSAQISEQALW 196
Query: 582 ALGNIAGDSPYCRDIVLAAGVLPPLLDILNKYTKL--SMTKNAVWTLSNLCRGKNP 743
A+ NIAGDS RD V+ + L+ ++ K +L S + W SN+CR KNP
Sbjct: 197 AVANIAGDSSQLRDYVIKCHGVEALMHLMEKVDQLGDSHVRTIAWAFSNMCRHKNP 252
Score = 53.2 bits (122), Expect = 2e-07
Identities = 31/130 (23%), Positives = 60/130 (46%)
Frame = +3
Query: 345 KEPNPPIDAVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVN 524
K P+ P++ + ++ K + L H + ++ +A WA++ + G Q + + G +
Sbjct: 250 KNPHAPLEVL---RVLSKGLVKLVQHTDRQVRQDACWAVSYLTDGPDEQIELARESGVLP 306
Query: 525 VLVGLLSGSTENVCEQAVWALGNIAGDSPYCRDIVLAAGVLPPLLDILNKYTKLSMTKNA 704
+V EN+ A+ LGN+A + V+ G L +L ++ K S+ K
Sbjct: 307 HVVAFFK-EAENLVAPALRTLGNVATGNDSLTQAVIDLGSLDEILPLMEKTRSSSIVKEC 365
Query: 705 VWTLSNLCRG 734
W +SN+ G
Sbjct: 366 CWLVSNIIAG 375
Score = 48.8 bits (111), Expect = 4e-06
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Frame = +3
Query: 369 AVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVNVLVGLLSG 548
AVI G + + + + ++ ++ E W ++NI +G+ Q + V+D + VL+ +L
Sbjct: 339 AVIDLGSLDEILPLMEKTRSSSIVKECCWLVSNIIAGTQKQIQAVLDANLLPVLINVLKS 398
Query: 549 STENVCEQAVWALGNIA-GDSPYCRDIVLAAGVLPPLLDILNKYTKLSMTKNAVWTLSNL 725
+A WAL N+A G + +L V+P L L + T M N + TL L
Sbjct: 399 GDHKCQFEASWALSNLAQGGTNRQVVAMLEDNVVPALCQALLQ-TNTDMLNNTLETLYTL 457
>AF326936-1|AAG49386.1| 531|Caenorhabditis elegans importin beta
binding domain proteinprotein.
Length = 531
Score = 152 bits (369), Expect = 2e-37
Identities = 92/236 (38%), Positives = 131/236 (55%), Gaps = 8/236 (3%)
Frame = +3
Query: 60 GGHKHRYKNVGLSADELRRRREEEGVQLRKQKREQQLFKRRN---VNLPGTNAAGAASQE 230
GG +YKN+ +ELRRRR E V++RKQK + KRRN V+ G + + E
Sbjct: 19 GGRLQQYKNL-TKHEELRRRRTECSVEIRKQKGADMMMKRRNIVDVDEGGNSESELEEPE 77
Query: 231 DINISPSDC-ITPDMVLAVYLDNPEEQ--VIATQKFRKLLSKEPNPPIDAVIQSGIVPKF 401
I+ S ++ D + A+ +NP E V + RK LSK NPPID VI G++
Sbjct: 78 KISHQQSSTRLSNDEIRAILSNNPSEDDMVRCFESLRKSLSKTKNPPIDEVIHCGLLQAL 137
Query: 402 IEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVNVLVGLLSGSTENVCEQAVW 581
++ L+ +N +Q+EAAWALTNI SGS+ QT V+ G L+ L + + EQA+W
Sbjct: 138 VQALSV-ENERVQYEAAWALTNIVSGSTEQTIAAVEAGVTIPLIHLSVHQSAQISEQALW 196
Query: 582 ALGNIAGDSPYCRDIVLAAGVLPPLLDILNKYTKL--SMTKNAVWTLSNLCRGKNP 743
A+ NIAGDS RD V+ + L+ ++ K +L S + W SN+CR KNP
Sbjct: 197 AVANIAGDSSQLRDYVIKCHGVEALMHLMEKVDQLGDSHVRTIAWAFSNMCRHKNP 252
Score = 53.2 bits (122), Expect = 2e-07
Identities = 31/130 (23%), Positives = 60/130 (46%)
Frame = +3
Query: 345 KEPNPPIDAVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVN 524
K P+ P++ + ++ K + L H + ++ +A WA++ + G Q + + G +
Sbjct: 250 KNPHAPLEVL---RVLSKGLVKLVQHTDRQVRQDACWAVSYLTDGPDEQIELARESGVLP 306
Query: 525 VLVGLLSGSTENVCEQAVWALGNIAGDSPYCRDIVLAAGVLPPLLDILNKYTKLSMTKNA 704
+V EN+ A+ LGN+A + V+ G L +L ++ K S+ K
Sbjct: 307 HVVAFFK-EAENLVAPALRTLGNVATGNDSLTQAVIDLGSLDEILPLMEKTRSSSIVKEC 365
Query: 705 VWTLSNLCRG 734
W +SN+ G
Sbjct: 366 CWLVSNIIAG 375
Score = 48.8 bits (111), Expect = 4e-06
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Frame = +3
Query: 369 AVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVNVLVGLLSG 548
AVI G + + + + ++ ++ E W ++NI +G+ Q + V+D + VL+ +L
Sbjct: 339 AVIDLGSLDEILPLMEKTRSSSIVKECCWLVSNIIAGTQKQIQAVLDANLLPVLINVLKS 398
Query: 549 STENVCEQAVWALGNIA-GDSPYCRDIVLAAGVLPPLLDILNKYTKLSMTKNAVWTLSNL 725
+A WAL N+A G + +L V+P L L + T M N + TL L
Sbjct: 399 GDHKCQFEASWALSNLAQGGTNRQVVAMLEDNVVPALCQALLQ-TNTDMLNNTLETLYTL 457
>AF040996-1|AAB97172.1| 531|Caenorhabditis elegans importin alpha 2
protein.
Length = 531
Score = 152 bits (369), Expect = 2e-37
Identities = 92/236 (38%), Positives = 131/236 (55%), Gaps = 8/236 (3%)
Frame = +3
Query: 60 GGHKHRYKNVGLSADELRRRREEEGVQLRKQKREQQLFKRRN---VNLPGTNAAGAASQE 230
GG +YKN+ +ELRRRR E V++RKQK + KRRN V+ G + + E
Sbjct: 19 GGRLQQYKNL-TKHEELRRRRTECSVEIRKQKGADMMMKRRNIVDVDEGGNSESELEEPE 77
Query: 231 DINISPSDC-ITPDMVLAVYLDNPEEQ--VIATQKFRKLLSKEPNPPIDAVIQSGIVPKF 401
I+ S ++ D + A+ +NP E V + RK LSK NPPID VI G++
Sbjct: 78 KISHQQSSTRLSNDEIRAILSNNPSEDDMVRCFESLRKSLSKTKNPPIDEVIHCGLLQAL 137
Query: 402 IEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVNVLVGLLSGSTENVCEQAVW 581
++ L+ +N +Q+EAAWALTNI SGS+ QT V+ G L+ L + + EQA+W
Sbjct: 138 VQALSV-ENERVQYEAAWALTNIVSGSTEQTIAAVEAGVTIPLIHLSVHQSAQISEQALW 196
Query: 582 ALGNIAGDSPYCRDIVLAAGVLPPLLDILNKYTKL--SMTKNAVWTLSNLCRGKNP 743
A+ NIAGDS RD V+ + L+ ++ K +L S + W SN+CR KNP
Sbjct: 197 AVANIAGDSSQLRDYVIKCHGVEALMHLMEKVDQLGDSHVRTIAWAFSNMCRHKNP 252
Score = 53.2 bits (122), Expect = 2e-07
Identities = 31/130 (23%), Positives = 60/130 (46%)
Frame = +3
Query: 345 KEPNPPIDAVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVN 524
K P+ P++ + ++ K + L H + ++ +A WA++ + G Q + + G +
Sbjct: 250 KNPHAPLEVL---RVLSKGLVKLVQHTDRQVRQDACWAVSYLTDGPDEQIELARESGVLP 306
Query: 525 VLVGLLSGSTENVCEQAVWALGNIAGDSPYCRDIVLAAGVLPPLLDILNKYTKLSMTKNA 704
+V EN+ A+ LGN+A + V+ G L +L ++ K S+ K
Sbjct: 307 HVVAFFK-EAENLVAPALRTLGNVATGNDSLTQAVIDLGSLDEILPLMEKTRSSSIVKEC 365
Query: 705 VWTLSNLCRG 734
W +SN+ G
Sbjct: 366 CWLVSNIIAG 375
Score = 48.8 bits (111), Expect = 4e-06
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Frame = +3
Query: 369 AVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVNVLVGLLSG 548
AVI G + + + + ++ ++ E W ++NI +G+ Q + V+D + VL+ +L
Sbjct: 339 AVIDLGSLDEILPLMEKTRSSSIVKECCWLVSNIIAGTQKQIQAVLDANLLPVLINVLKS 398
Query: 549 STENVCEQAVWALGNIA-GDSPYCRDIVLAAGVLPPLLDILNKYTKLSMTKNAVWTLSNL 725
+A WAL N+A G + +L V+P L L + T M N + TL L
Sbjct: 399 GDHKCQFEASWALSNLAQGGTNRQVVAMLEDNVVPALCQALLQ-TNTDMLNNTLETLYTL 457
>AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alpha-3
subunit protein.
Length = 423
Score = 149 bits (361), Expect = 2e-36
Identities = 72/136 (52%), Positives = 94/136 (69%)
Frame = +3
Query: 336 LLSKEPNPPIDAVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYG 515
+LS + NPPID +I SGI+P ++ L++ +P LQFEAAWALTNIASG+S QT+ VV+ G
Sbjct: 1 MLSTDRNPPIDDLIGSGILPVLVQCLSS-TDPNLQFEAAWALTNIASGTSEQTQAVVNAG 59
Query: 516 AVNVLVGLLSGSTENVCEQAVWALGNIAGDSPYCRDIVLAAGVLPPLLDILNKYTKLSMT 695
AV + + LLS NVCEQ+VWALGNI GD P+ RD L G+L PLL +N +
Sbjct: 60 AVPLFLQLLSCGNLNVCEQSVWALGNIIGDGPHFRDYCLELGILQPLLQFINPEIPIGFL 119
Query: 696 KNAVWTLSNLCRGKNP 743
+N W + NLCR K+P
Sbjct: 120 RNVTWVIVNLCRCKDP 135
Score = 68.1 bits (159), Expect = 6e-12
Identities = 41/131 (31%), Positives = 71/131 (54%), Gaps = 1/131 (0%)
Frame = +3
Query: 354 NPPIDAVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVNVLV 533
N I VI++ +V + L H + +Q A A+ NI +G+ QT++V+D G + +
Sbjct: 176 NEHIQMVIEAQVVTHLVPLL-GHVDVKVQTAALRAVGNIVTGTDEQTQLVLDSGVLRFMP 234
Query: 534 GLLSGSTENVCEQAVWALGNI-AGDSPYCRDIVLAAGVLPPLLDILNKYTKLSMTKNAVW 710
GLL+ E + ++AVW + NI AG+ +D V AG++P ++ +L++ K A W
Sbjct: 235 GLLAHYKEKINKEAVWFVSNITAGNQQQVQD-VFDAGIMPMIIHLLDR-GDFPTQKEAAW 292
Query: 711 TLSNLCRGKNP 743
+SN+ P
Sbjct: 293 AISNVTISGRP 303
Score = 57.6 bits (133), Expect = 9e-09
Identities = 40/130 (30%), Positives = 68/130 (52%)
Frame = +3
Query: 345 KEPNPPIDAVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVN 524
K+P P AV+++ I+P + L +H++ + + WAL+ + G + ++V++ V
Sbjct: 133 KDPAPS-PAVVRT-ILPA-LSLLIHHQDTNILIDTVWALSYLTDGGNEHIQMVIEAQVVT 189
Query: 525 VLVGLLSGSTENVCEQAVWALGNIAGDSPYCRDIVLAAGVLPPLLDILNKYTKLSMTKNA 704
LV LL V A+ A+GNI + +VL +GVL + +L Y K + K A
Sbjct: 190 HLVPLLGHVDVKVQTAALRAVGNIVTGTDEQTQLVLDSGVLRFMPGLLAHY-KEKINKEA 248
Query: 705 VWTLSNLCRG 734
VW +SN+ G
Sbjct: 249 VWFVSNITAG 258
>Z73908-4|CAA98127.2| 447|Caenorhabditis elegans Hypothetical
protein F53B2.5 protein.
Length = 447
Score = 46.4 bits (105), Expect = 2e-05
Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Frame = +3
Query: 438 QFEAAWALTNIASGSSGQTRIVVDYGAVNVLVGLLSGSTENVCEQAVWALGNIAGDSPYC 617
+ A W +TN+ S T + V+ +++L+ L+ + Q VWA+ NIA D C
Sbjct: 58 EVNAVWIITNMCCISQEVTHLFVNSNCLDILIKLVRSQNARLSSQTVWAIANIAADCSSC 117
Query: 618 RDIVLAAGVLPPLLDILNKYTKL--SMTKNAVWTLSNLCRG 734
+ + +L L L KL + + +W ++N+ G
Sbjct: 118 KLKCRSPKLLKILARNLQTSYKLDDADRRQLIWCVNNIFSG 158
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/105 (19%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
Frame = +3
Query: 426 NPTLQFEAAWALTNIASGSSGQTRIVVDYGAVN---VLVGLLSGSTENVCEQAVWALGNI 596
+P EAAW ++N+ +G+ ++D V+ G+ +G + + ++ +W +GN+
Sbjct: 274 SPEHHSEAAWIISNVVAGAPRHVDYIMDDPDAFYEWVMAGIHTGD-KRLRKECLWIIGNL 332
Query: 597 AGDSPYCRDIVLAAGVLPPLLDILNKYTKLSMTKNAVWTLSNLCR 731
+ + +L + + L + + + + A T + L R
Sbjct: 333 LATADEHQTYLLVSLGIVQHFPALLDFDDVRLNEKAATTATELLR 377
>Z74043-9|CAA98540.1| 524|Caenorhabditis elegans Hypothetical
protein T19B10.7 protein.
Length = 524
Score = 34.3 bits (75), Expect = 0.094
Identities = 13/39 (33%), Positives = 26/39 (66%)
Frame = +3
Query: 78 YKNVGLSADELRRRREEEGVQLRKQKREQQLFKRRNVNL 194
YK+ +E+RR+R E+ VQ+RK +R+++ + R + +
Sbjct: 16 YKSNVRDQNEMRRKRREDEVQIRKNRRDEKFERNRQITV 54
>AF040997-1|AAB97173.1| 524|Caenorhabditis elegans importin alpha 1
protein.
Length = 524
Score = 34.3 bits (75), Expect = 0.094
Identities = 13/39 (33%), Positives = 26/39 (66%)
Frame = +3
Query: 78 YKNVGLSADELRRRREEEGVQLRKQKREQQLFKRRNVNL 194
YK+ +E+RR+R E+ VQ+RK +R+++ + R + +
Sbjct: 16 YKSNVRDQNEMRRKRREDEVQIRKNRRDEKFERNRQITV 54
>U23521-8|AAC46810.4| 505|Caenorhabditis elegans Hypothetical
protein F41C3.3 protein.
Length = 505
Score = 31.5 bits (68), Expect = 0.66
Identities = 10/25 (40%), Positives = 20/25 (80%), Gaps = 2/25 (8%)
Frame = +2
Query: 20 FFSLHCSVFKYN--VWRSQTSLQEC 88
++SLHCS+F ++ +WRS+ +++C
Sbjct: 222 YYSLHCSLFSHSTMIWRSKFEVEDC 246
>Z70205-1|CAA94117.2| 460|Caenorhabditis elegans Hypothetical
protein C11H1.2 protein.
Length = 460
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
Frame = +2
Query: 17 FFFSLHCSVFKYNVWR-----SQTSLQECWTEC 100
F FSL CS+F+ ++ TS Q+CWT C
Sbjct: 46 FTFSLSCSLFELIIFEIADILDPTSRQKCWTNC 78
>Z83120-3|CAB05587.1| 419|Caenorhabditis elegans Hypothetical
protein R06A4.4b protein.
Length = 419
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = +3
Query: 540 LSGSTENVCEQAVWALGNIA-GDSPYCRDIVLAAGVLPPLLDILNKYTKLSMT--KNAVW 710
L S +VC A+WALG +A P + + ++ PL+ ++N + T +N
Sbjct: 245 LDPSKISVCNNAIWALGELALKMGPAMKQFI--GPIIEPLIVVINSQQNMQRTLLENTAI 302
Query: 711 TLSNL 725
T+ L
Sbjct: 303 TIGRL 307
>Z83120-2|CAB05586.1| 883|Caenorhabditis elegans Hypothetical
protein R06A4.4a protein.
Length = 883
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = +3
Query: 540 LSGSTENVCEQAVWALGNIA-GDSPYCRDIVLAAGVLPPLLDILNKYTKLSMT--KNAVW 710
L S +VC A+WALG +A P + + ++ PL+ ++N + T +N
Sbjct: 709 LDPSKISVCNNAIWALGELALKMGPAMKQFI--GPIIEPLIVVINSQQNMQRTLLENTAI 766
Query: 711 TLSNL 725
T+ L
Sbjct: 767 TIGRL 771
>Z54271-4|CAA91034.1| 259|Caenorhabditis elegans Hypothetical
protein F21D5.4 protein.
Length = 259
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +1
Query: 586 LETSLETRPTAEISSSQLAFSHPCLTF*ISTRNCQ*RKMLFGRCRICAE 732
LETS E P + ++ L F + + F T NCQ +K +G R C +
Sbjct: 9 LETSSEPPPKKKRANFTLEFKNEVIRFAEQTNNCQAQKK-YGVARACIQ 56
>AF016449-14|AAG23991.1| 517|Caenorhabditis elegans Hypothetical
protein C50H11.1 protein.
Length = 517
Score = 29.5 bits (63), Expect = 2.7
Identities = 10/25 (40%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Frame = +2
Query: 20 FFSLHCSVFKYN--VWRSQTSLQEC 88
+FSLHCS+F ++ +WR ++C
Sbjct: 234 YFSLHCSLFSHSSVIWRPNFDAEDC 258
>AC024775-2|AAK68456.1| 452|Caenorhabditis elegans Hypothetical
protein Y41D4A.6 protein.
Length = 452
Score = 29.5 bits (63), Expect = 2.7
Identities = 30/98 (30%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Frame = +3
Query: 468 IASGSSGQTRIVVDYGAVNVLVGL-LSGSTENVCEQAVWALGNIAGDSPYCRDIVLAAGV 644
I GSSG + + V G + +G GST N A I G P VL+
Sbjct: 125 IPGGSSGGSAVAVQTGIADFALGSDTGGSTRNPA-----AFNGIFGFKPTYG--VLSRNG 177
Query: 645 LPPLLDILNKYTKLSMTKNAVWTLSNLCRG--KNPPTN 752
L PL++ L+ + + T W L L +G KN T+
Sbjct: 178 LIPLVNSLDAPSIFAKTAQKCWELLELSKGIDKNDSTS 215
>AC024137-2|AAK09075.1| 1603|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 3 protein.
Length = 1603
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Frame = +3
Query: 90 GLSADELRRRREEEGVQLRKQKREQQLFKRRNVNLPGTNAAGA----ASQEDINISPSDC 257
G +DELR RR + G+Q+ ++ ++ + R NA + D + P D
Sbjct: 726 GKQSDELRSRRVQSGIQMLQEIVKKMNIRPRVQQTDSQNAHAVFYLRYKEMDYIVLPIDM 785
Query: 258 ITPDMVLAVYLDNPE 302
T D V+ Y+ N E
Sbjct: 786 ETIDNVVEKYVRNGE 800
>AC024137-1|AAK09074.1| 1603|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 4 protein.
Length = 1603
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Frame = +3
Query: 90 GLSADELRRRREEEGVQLRKQKREQQLFKRRNVNLPGTNAAGA----ASQEDINISPSDC 257
G +DELR RR + G+Q+ ++ ++ + R NA + D + P D
Sbjct: 726 GKQSDELRSRRVQSGIQMLQEIVKKMNIRPRVQQTDSQNAHAVFYLRYKEMDYIVLPIDM 785
Query: 258 ITPDMVLAVYLDNPE 302
T D V+ Y+ N E
Sbjct: 786 ETIDNVVEKYVRNGE 800
>X03044-1|CAA26849.1| 1603|Caenorhabditis elegans put. vitellogenin
protein.
Length = 1603
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Frame = +3
Query: 90 GLSADELRRRREEEGVQLRKQKREQQLFKRRNVNLPGTNAAGA----ASQEDINISPSDC 257
G +DELR RR + G+Q+ ++ ++ + R NA + D + P D
Sbjct: 726 GKQSDELRSRRVQSGIQMLQEIVKKMNIRPRVQQTDSQNAHAVFYLRYKEMDYIVLPIDM 785
Query: 258 ITPDMVLAVYLDNPE 302
T D ++ Y+ N E
Sbjct: 786 ETIDTLVEKYVRNGE 800
>U42835-3|AAA83587.1| 1603|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 5 protein.
Length = 1603
Score = 28.7 bits (61), Expect = 4.7
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Frame = +3
Query: 90 GLSADELRRRREEEGVQLRKQKREQQLFKRRNVNLPGTNAAGA----ASQEDINISPSDC 257
G +DELR RR + G+Q+ ++ ++ + R NA + D + P D
Sbjct: 726 GKQSDELRSRRVQSGIQMLQEIVKKMNIRPRVQQTDSQNAHAVFYLRYKEMDYIVLPIDM 785
Query: 258 ITPDMVLAVYLDNPE 302
T D ++ Y+ N E
Sbjct: 786 ETIDTLVEKYVRNGE 800
>AF047656-8|AAC05109.2| 340|Caenorhabditis elegans Ligand-gated ion
channel protein 5 protein.
Length = 340
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Frame = +3
Query: 231 DINISPSDC-----ITPDMVLAVYLDNPEEQVIATQKF 329
D+N+ PSD ITP+ L + +D +E ++ +Q+F
Sbjct: 41 DVNVKPSDTLTTVTITPNTFLLLSMDQTQETILFSQEF 78
>AF000299-6|AAC47978.1| 297|Caenorhabditis elegans Hypothetical
protein E03H12.2 protein.
Length = 297
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +3
Query: 498 IVVDYGAVNVLVGLLSGSTENVCEQAVWALGNIAGDSPYCRDI 626
I + VN + T C +W++GN S YC+D+
Sbjct: 108 ITYEKSCVNSTFRMFPRPTGPFCLDVLWSVGNRVKSSTYCKDL 150
>Z35595-5|CAA84636.1| 952|Caenorhabditis elegans Hypothetical
protein C01G6.5 protein.
Length = 952
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +3
Query: 81 KNVG-LSADELRRRREEEGVQLRKQKREQQLFKRRNVNLPGTNAAGAASQEDINISPSDC 257
KN G DEL RR+EE V + ++ E Q + R + + + A D IS S
Sbjct: 312 KNKGSFKVDELSRRKEELAVMM--EEEEPQTIEIRELLVSLSEKAQDVQSNDFTISASSA 369
Query: 258 IT 263
T
Sbjct: 370 FT 371
>AF036692-5|AAS47681.1| 319|Caenorhabditis elegans Serpentine
receptor, class x protein13 protein.
Length = 319
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = -1
Query: 431 WILMVCQEFNKFWYNSRL--YNCINWRIRFLT*KLSELLCCYDLFF 300
W + C F FWY+ YN I+W F + ++ Y ++
Sbjct: 151 WFIAFCHIFPYFWYDKCFITYNPISWTWNFAPTECGHVISTYTDYY 196
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,626,342
Number of Sequences: 27780
Number of extensions: 340592
Number of successful extensions: 1221
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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