Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1c08
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces po...    95   1e-20
SPCC4B3.01 ||SPCP25A2.01c|thiosulfate sulfurtransferase|Schizosa...    37   0.003
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    27   1.8  
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    27   3.1  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   7.2  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    25   7.2  
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom...    25   9.5  
SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces p...    25   9.5  
SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|ch...    25   9.5  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    25   9.5  

>SPAC4H3.07c |||protein phosphatase Fmp31 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 171

 Score = 94.7 bits (225), Expect = 1e-20
 Identities = 47/108 (43%), Positives = 65/108 (60%)
 Frame = +3

Query: 213 YDEVVKAISNNNILLIDVREPDEVKDHGHIPNSINIPLGTISTVLGEMSDKEFNKTYKRP 392
           Y+   +   + + +LIDVREPDE K  G I  S N+P+G I   + ++SD+EF+KTY   
Sbjct: 64  YNLSKRPTGDKSTVLIDVREPDEFKQ-GAIETSYNLPVGKIEEAM-KLSDEEFSKTYGFS 121

Query: 393 KPNQNTELIFYCMAGRRSAKAQESAINLGFKNTKNYQGSWTEWASKGK 536
           KP     ++ YC +GRRS  A +    LG+KN  NY GSW EW+ K K
Sbjct: 122 KPVFEDNVVVYCRSGRRSTTASDILTKLGYKNIGNYTGSWLEWSDKIK 169


>SPCC4B3.01 ||SPCP25A2.01c|thiosulfate
           sulfurtransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 298

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 28/125 (22%), Positives = 57/125 (45%), Gaps = 16/125 (12%)
 Frame = +3

Query: 204 VADYDEVVKAISNNN---ILLIDVREPDEVKDH----------GHIPNSINIPL--GTIS 338
           VA +D++VK I + +   + ++D R  +    +          GHIP SINIP    T +
Sbjct: 162 VASFDDIVKVIESPDAAGVHIVDARAHERFLGNVPESRPGLASGHIPTSINIPFTETTAA 221

Query: 339 TVLGEMSDKEFNKTY-KRPKPNQNTELIFYCMAGRRSAKAQESAINLGFKNTKNYQGSWT 515
            +     +++  K +      +++  +I  C +G  ++    +    GFK+ + Y  SW+
Sbjct: 222 GITAPKPEEDLEKVFSSHGLTDKSVPIITSCGSGVTASVLFAALKECGFKDVRVYDESWS 281

Query: 516 EWASK 530
            +  +
Sbjct: 282 GYGKR 286


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +3

Query: 492 KNYQGSWTEWASK 530
           KN QGSW EW SK
Sbjct: 575 KNMQGSWHEWESK 587


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
 Frame = +3

Query: 102 NYARKQLSSNEYKAIPQLNALSLRLYSES----KVETKVADYDEVVKAISNNNILLIDVR 269
           N  + +  +NE KA  Q+  L ++ YS+S    K   ++   DE ++A +  ++L +  +
Sbjct: 598 NDLQNKSQNNERKASSQVKELEVKNYSKSTDLLKKTLRIPRNDEPLEAANQFDLLKVSPQ 657

Query: 270 EPDEV 284
           +  EV
Sbjct: 658 QKSEV 662


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/57 (26%), Positives = 25/57 (43%)
 Frame = +3

Query: 303 PNSINIPLGTISTVLGEMSDKEFNKTYKRPKPNQNTELIFYCMAGRRSAKAQESAIN 473
           PNS  +   TI++   E+   E    +   K     E+  +C  G   + ++E AIN
Sbjct: 400 PNSKEV---TITSAPDEVEQDEAKSFHSSAKFQTEKEITDFCQKGVEESASEEEAIN 453


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +3

Query: 285  KDHGHIPNSINIPLGTISTVLGEMSDKEFNKTYKRPKPNQNTELIFY 425
            K +GHI    +I +  +S+++GE  ++ +    K    ++  E+I Y
Sbjct: 1406 KAYGHIERHRDILVNDLSSIIGESYNRAYGIMVKSQMLSELEEIIDY 1452


>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 558

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 216 DEVVKAISNNNILLIDVREPDEVKDHGHIPNSIN 317
           +E +   ++  IL  D+R PD V+ + H    IN
Sbjct: 367 NEFLAGTADKRILQFDIRSPDIVQAYDHHLGGIN 400


>SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 577 KTNMRFYIHFKINHFPLLAHSVQ 509
           K  + +Y+H  +N+FP L    Q
Sbjct: 226 KVQLMYYVHLFLNYFPSLGEKQQ 248


>SPAC4F10.06 |||BUD22 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 388

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 16/70 (22%), Positives = 29/70 (41%)
 Frame = +3

Query: 204 VADYDEVVKAISNNNILLIDVREPDEVKDHGHIPNSINIPLGTISTVLGEMSDKEFNKTY 383
           V+   + +K I   ++        D+V D+ H+ NS +        +L    DKE NK+ 
Sbjct: 163 VSSTQKPIKTIGKVDLSNKSTSNQDQV-DNTHVQNSTDGVNQDTGMILDNTEDKEINKSM 221

Query: 384 KRPKPNQNTE 413
                N+  +
Sbjct: 222 SYSMKNEGVK 231


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 184 SEYNLRDKAFNCGIALYSFDDNCFR 110
           S+ N+R +A N  I LY++  N F+
Sbjct: 179 SDKNIRQEASNLSITLYAWVGNAFK 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,361,782
Number of Sequences: 5004
Number of extensions: 43171
Number of successful extensions: 137
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)