Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1c06
         (405 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi...    27   0.84 
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi...    26   1.9  
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    25   3.4  
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces...    25   4.5  
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy...    25   5.9  

>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
           Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 27.5 bits (58), Expect = 0.84
 Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = +2

Query: 89  NDGSIDSEEFSSVYASFGLDKAEAASAFQKLSKGKSS--VSFAEFQELFKEYFASEDVNA 262
           +   +  ++   +  S   DK E    ++   K   S  ++ +EFQ+++K++F   D +A
Sbjct: 4   SQSKLSQDQLQDLVRSTRFDKKELQQWYKGFFKDCPSGHLNKSEFQKIYKQFFPFGDPSA 63

Query: 263 PGNFVF 280
              +VF
Sbjct: 64  FAEYVF 69


>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
           Tom70|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 152 AEAASAFQKLSKGKSSVSFAEFQELFKEYFASEDVNAPGNFVFGKTSF 295
           A  A A++ L KG+  +S+ + +E     F+S  VNA  + + G   F
Sbjct: 311 AALAEAYEYLEKGEYQLSYDKAKESCLGSFSSPSVNARTHNLVGTFKF 358


>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 16/61 (26%), Positives = 20/61 (32%)
 Frame = +2

Query: 71  QLEDASNDGSIDSEEFSSVYASFGLDKAEAASAFQKLSKGKSSVSFAEFQELFKEYFASE 250
           QLE    +   DSEE        G D  ++A      S           +E   E   SE
Sbjct: 736 QLEMDEEESDFDSEEMDKAMTDMGSDSEQSADENDNESMASEEKPMFSDEENLSEIAHSE 795

Query: 251 D 253
           D
Sbjct: 796 D 796


>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 403

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 218 QELFKEYFASEDVNAPGNFVFG 283
           ++LF  +F  +  + PG F FG
Sbjct: 212 EDLFNSFFGDQFFSGPGTFFFG 233


>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 754

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 173 QKLSKGKSSVSFAEFQELFKEYFASEDVNAP 265
           +++ KGK+S S  E  ++FKEY + ++   P
Sbjct: 682 ERVMKGKTSPS--EMFKMFKEYLSFDEAGLP 710


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,527,357
Number of Sequences: 5004
Number of extensions: 28293
Number of successful extensions: 102
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)