Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1c06
         (405 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY962814-1|AAX81435.1|  189|Caenorhabditis elegans calexcitin 2 ...    61   3e-10
Z36753-1|CAA85340.2|  193|Caenorhabditis elegans Hypothetical pr...    54   4e-08
U39997-1|AAA81096.1|  204|Caenorhabditis elegans Calexcitin prot...    46   1e-05
M23366-1|AAA28114.1|  170|Caenorhabditis elegans myosin light ch...    31   0.24 
M23365-1|AAA28113.1|  170|Caenorhabditis elegans myosin light ch...    31   0.24 
AC024089-6|AAK09070.2|  170|Caenorhabditis elegans Myosin light ...    31   0.24 
AC024089-5|AAK09069.1|  170|Caenorhabditis elegans Myosin light ...    31   0.24 
Z81568-13|CAH10811.1|  153|Caenorhabditis elegans Hypothetical p...    29   0.96 
AC025721-2|AAK29901.3|  976|Caenorhabditis elegans Hypothetical ...    29   1.3  
L14433-5|AAA27976.2|  202|Caenorhabditis elegans Hypothetical pr...    28   2.2  
Z70753-8|CAA94763.1|  137|Caenorhabditis elegans Hypothetical pr...    27   3.9  
AL033536-10|CAN86926.1|  345|Caenorhabditis elegans Hypothetical...    27   3.9  
AL033536-9|CAA22140.1|  344|Caenorhabditis elegans Hypothetical ...    27   3.9  
Z81593-11|CAI94505.2|  360|Caenorhabditis elegans Hypothetical p...    27   6.8  
Z80216-5|CAB02282.1|  190|Caenorhabditis elegans Hypothetical pr...    27   6.8  
L33681-1|AAA85632.1|  190|Caenorhabditis elegans neuronal calciu...    27   6.8  
U00044-7|AAA50675.1|  990|Caenorhabditis elegans Hypothetical pr...    26   9.0  

>AY962814-1|AAX81435.1|  189|Caenorhabditis elegans calexcitin 2
           protein.
          Length = 189

 Score = 60.9 bits (141), Expect = 3e-10
 Identities = 28/87 (32%), Positives = 54/87 (62%), Gaps = 5/87 (5%)
 Frame = +2

Query: 41  WQNLYCKFIFQLEDASNDGSIDSEEFSSVYASFGLDKAEAASAFQKLS---KGK--SSVS 205
           WQ  Y +++F+L D S D  +D  E+  V   FG+++ +++  F + +   +G+  +S+ 
Sbjct: 102 WQKAYVEYMFKLLDESGDHLVDQAEYVQVLGYFGVNRKDSSHCFDQFAFNHQGQLINSID 161

Query: 206 FAEFQELFKEYFASEDVNAPGNFVFGK 286
             +F  L+K++F SED ++PGN++ GK
Sbjct: 162 KKKFHVLWKQFFHSEDPSSPGNWLLGK 188


>Z36753-1|CAA85340.2|  193|Caenorhabditis elegans Hypothetical
           protein T09A5.1a protein.
          Length = 193

 Score = 54.0 bits (124), Expect = 4e-08
 Identities = 28/91 (30%), Positives = 54/91 (59%), Gaps = 9/91 (9%)
 Frame = +2

Query: 41  WQNLYCKFIFQLEDAS----NDGSIDSEEFSSVYASFGLDKAEAASAFQKLS---KGK-- 193
           WQ  Y +++F+L D S     D  +D  E+  V   FG+++ +++  F + +   +G+  
Sbjct: 102 WQKAYVEYMFKLLDESVSFSGDHLVDQAEYVQVLGYFGVNRKDSSHCFDQFAFNHQGQLI 161

Query: 194 SSVSFAEFQELFKEYFASEDVNAPGNFVFGK 286
           +S+   +F  L+K++F SED ++PGN++ GK
Sbjct: 162 NSIDKKKFHVLWKQFFHSEDPSSPGNWLLGK 192


>U39997-1|AAA81096.1|  204|Caenorhabditis elegans Calexcitin protein
           1 protein.
          Length = 204

 Score = 46.0 bits (104), Expect = 1e-05
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
 Frame = +2

Query: 41  WQNLYCKFIFQLEDASNDGSIDSEEFSSVYASFGLDKAEAASAFQKLSKGKSSVSFAE-- 214
           W   Y  F+F+L D S DG +D  E++   +++G D++E  +AF K S  K      +  
Sbjct: 115 WFKDYQNFMFKLFDVSCDGVMDLAEYTDGMSTYGFDQSECDAAFHKFSVDKKGQYVPQMK 174

Query: 215 ---FQELFKEYFASEDVNAPGNFVFGKTSF 295
              +   F + F S + +  GN +FG   F
Sbjct: 175 PETWNTYFHQLFYSTNKSDVGNHLFGIIDF 204


>M23366-1|AAA28114.1|  170|Caenorhabditis elegans myosin light chain
           2 protein.
          Length = 170

 Score = 31.5 bits (68), Expect = 0.24
 Identities = 19/68 (27%), Positives = 28/68 (41%)
 Frame = +2

Query: 59  KFIFQLEDASNDGSIDSEEFSSVYASFGLDKAEAASAFQKLSKGKSSVSFAEFQELFKEY 238
           K  F + D + DG ID  +   +YAS G   A  +     + +    ++F  F  LF E 
Sbjct: 30  KEAFGIMDQNKDGIIDKSDLKDLYASMG-QIAPDSQIDAMIKEASGPINFTVFLTLFGER 88

Query: 239 FASEDVNA 262
               D  A
Sbjct: 89  LTGTDPEA 96


>M23365-1|AAA28113.1|  170|Caenorhabditis elegans myosin light chain
           1 protein.
          Length = 170

 Score = 31.5 bits (68), Expect = 0.24
 Identities = 19/68 (27%), Positives = 28/68 (41%)
 Frame = +2

Query: 59  KFIFQLEDASNDGSIDSEEFSSVYASFGLDKAEAASAFQKLSKGKSSVSFAEFQELFKEY 238
           K  F + D + DG ID  +   +YAS G   A  +     + +    ++F  F  LF E 
Sbjct: 30  KEAFGIMDQNKDGIIDKSDLKDLYASMG-QIAPDSQIDAMIKEASGPINFTVFLTLFGER 88

Query: 239 FASEDVNA 262
               D  A
Sbjct: 89  LTGTDPEA 96


>AC024089-6|AAK09070.2|  170|Caenorhabditis elegans Myosin light
           chain protein 1 protein.
          Length = 170

 Score = 31.5 bits (68), Expect = 0.24
 Identities = 19/68 (27%), Positives = 28/68 (41%)
 Frame = +2

Query: 59  KFIFQLEDASNDGSIDSEEFSSVYASFGLDKAEAASAFQKLSKGKSSVSFAEFQELFKEY 238
           K  F + D + DG ID  +   +YAS G   A  +     + +    ++F  F  LF E 
Sbjct: 30  KEAFGIMDQNKDGIIDKSDLKDLYASMG-QIAPDSQIDAMIKEASGPINFTVFLTLFGER 88

Query: 239 FASEDVNA 262
               D  A
Sbjct: 89  LTGTDPEA 96


>AC024089-5|AAK09069.1|  170|Caenorhabditis elegans Myosin light
           chain protein 2 protein.
          Length = 170

 Score = 31.5 bits (68), Expect = 0.24
 Identities = 19/68 (27%), Positives = 28/68 (41%)
 Frame = +2

Query: 59  KFIFQLEDASNDGSIDSEEFSSVYASFGLDKAEAASAFQKLSKGKSSVSFAEFQELFKEY 238
           K  F + D + DG ID  +   +YAS G   A  +     + +    ++F  F  LF E 
Sbjct: 30  KEAFGIMDQNKDGIIDKSDLKDLYASMG-QIAPDSQIDAMIKEASGPINFTVFLTLFGER 88

Query: 239 FASEDVNA 262
               D  A
Sbjct: 89  LTGTDPEA 96


>Z81568-13|CAH10811.1|  153|Caenorhabditis elegans Hypothetical
           protein K08E3.10 protein.
          Length = 153

 Score = 29.5 bits (63), Expect = 0.96
 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
 Frame = +2

Query: 65  IFQLEDASNDGSIDSEEFSSVYASFGLDKAEAASAFQKLSKGKSS---VSFAEFQELFKE 235
           +F   D   DG IDS++  +   +  L+  EA  A  ++SK ++S   ++  EF  ++K+
Sbjct: 13  VFHFHDTLGDGKIDSKQLPTALRAMMLNPTEALLA--EVSKARTSGARITVEEFIPIYKK 70

Query: 236 YFAS 247
             A+
Sbjct: 71  VEAA 74


>AC025721-2|AAK29901.3|  976|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.10 protein.
          Length = 976

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 19/60 (31%), Positives = 31/60 (51%)
 Frame = +3

Query: 96  GPSTARNSLRSTHLLV*TRLKLHQLFRSYPKASHLSPSLNSRNCSKNISLLRM*TPLETL 275
           G S A N LRS HL    R ++H  F   P  + L P  ++ + S  ++++   TP+ T+
Sbjct: 800 GASEAANHLRSVHLF--ARPRIHLQFMK-PSTNDLIPITSAPSDSLALAIIPSTTPVTTI 856


>L14433-5|AAA27976.2|  202|Caenorhabditis elegans Hypothetical
           protein C50C3.5 protein.
          Length = 202

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = +2

Query: 65  IFQLEDASNDGSIDSEEFSSVYASFGLD-KAEAASAFQKLS--KGKSSVSFAEF 217
           IFQL D    G+I S E + +    G+D   +   A  + S   G   + F EF
Sbjct: 55  IFQLMDDDGSGTISSSEVAKMLNELGIDVSPKVVQAVMRSSDVSGDGQIDFEEF 108


>Z70753-8|CAA94763.1|  137|Caenorhabditis elegans Hypothetical
           protein F40F9.8 protein.
          Length = 137

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +2

Query: 80  DASNDGSIDSEEFSSVYASFGLD--KAEAASAFQKLSKGKSSVSF 208
           D  +DG I++++ S V  SFGL+  + E     ++ +K    VSF
Sbjct: 3   DEDSDGLIETDDVSHVLRSFGLNPSQTELQLVSEQTAKKNGRVSF 47


>AL033536-10|CAN86926.1|  345|Caenorhabditis elegans Hypothetical
           protein Y53C10A.6b protein.
          Length = 345

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +2

Query: 41  WQNLYCKFIFQLEDASNDGSIDSEEFSSVYASFGLDKA--EAASAFQKLSKGKSSVSFAE 214
           W+   CK+I  LE    D  +D  +    + +  LDK+         K+ + +S + + E
Sbjct: 182 WREHVCKYIKDLEAFETDNLMDLSDEQKEFINVLLDKSTKTVPQIDAKIEQKRSQIGYEE 241

Query: 215 FQELFKEYF 241
            Q+ F+ ++
Sbjct: 242 EQD-FEPFY 249


>AL033536-9|CAA22140.1|  344|Caenorhabditis elegans Hypothetical
           protein Y53C10A.6a protein.
          Length = 344

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +2

Query: 41  WQNLYCKFIFQLEDASNDGSIDSEEFSSVYASFGLDKA--EAASAFQKLSKGKSSVSFAE 214
           W+   CK+I  LE    D  +D  +    + +  LDK+         K+ + +S + + E
Sbjct: 182 WREHVCKYIKDLEAFETDNLMDLSDEQKEFINVLLDKSTKTVPQIDAKIEQKRSQIGYEE 241

Query: 215 FQELFKEYF 241
            Q+ F+ ++
Sbjct: 242 EQD-FEPFY 249


>Z81593-11|CAI94505.2|  360|Caenorhabditis elegans Hypothetical
           protein T20B3.16 protein.
          Length = 360

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +2

Query: 47  NLYCKFIFQLEDASNDGSIDSEEFSSVYASFGLDKAEAASAFQKLSKGK 193
           N+Y  F+ +L    ND +  +   +  Y  +  DKA + +  QK  K K
Sbjct: 217 NVYMYFVCELPPTINDNNCYNNYNNHCYLRYDKDKAYSIADAQKFCKTK 265


>Z80216-5|CAB02282.1|  190|Caenorhabditis elegans Hypothetical
           protein F10G8.5 protein.
          Length = 190

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 32  PSDWQNLYCKFIFQLEDASNDGSIDSEEF 118
           PS     +C+ +F+  D  N G ID +EF
Sbjct: 59  PSGSAEGFCEHVFRTFDTDNSGFIDFKEF 87


>L33681-1|AAA85632.1|  190|Caenorhabditis elegans neuronal calcium
           binding protein protein.
          Length = 190

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 32  PSDWQNLYCKFIFQLEDASNDGSIDSEEF 118
           PS     +C+ +F+  D  N G ID +EF
Sbjct: 59  PSGSAEGFCEHVFRTFDTDNSGFIDFKEF 87


>U00044-7|AAA50675.1|  990|Caenorhabditis elegans Hypothetical
           protein K04C2.2 protein.
          Length = 990

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 185 KGKSSVSFAEFQELFKEYFASEDVNAPGNFV 277
           K  S+    EFQ LF+ Y  + +   P NFV
Sbjct: 801 KSMSAGVKTEFQSLFENYLKNVEGKVPSNFV 831


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,285,309
Number of Sequences: 27780
Number of extensions: 152009
Number of successful extensions: 448
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)