Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1c06
         (405 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   1.3  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   7.0  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.0  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    20   9.3  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -3

Query: 100 GPVITSILKL-KYKLAV*ILPVTGAAGKLLPEG 5
           G VI  I+ +  Y +   ++PV G  G+ +PEG
Sbjct: 160 GQVILFIVLIWTYTIPWALMPVMGVWGRFVPEG 192


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 32  PSDWQNLYCKFIFQLEDASNDGSIDSEEFSS 124
           P+  Q L  KFIF  E+  ND    S+   S
Sbjct: 120 PTKHQKLDQKFIFPQENNYNDNYFYSKSNGS 150


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 89   NDGSIDSEEFSSVYASFGLDKAEAA 163
            ND  +D    SS Y+SF    +E++
Sbjct: 946  NDYIVDESSSSSFYSSFLYKSSESS 970


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 270 FPGAFTSSEAK 238
           FPGA  +SEAK
Sbjct: 12  FPGASANSEAK 22


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,518
Number of Sequences: 438
Number of extensions: 1775
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10132494
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)