Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt1c03
(796 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
L01588-1|AAA27735.1| 74|Apis mellifera zinc finger protein pro... 22 5.7
DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex det... 22 5.7
DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex det... 22 5.7
DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex det... 22 5.7
DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex det... 22 5.7
DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex det... 22 5.7
DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex det... 22 5.7
DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex det... 22 5.7
DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex det... 22 5.7
DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex det... 22 5.7
AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex det... 22 5.7
AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex det... 22 5.7
AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 22 5.7
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 10.0
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 10.0
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 10.0
>L01588-1|AAA27735.1| 74|Apis mellifera zinc finger protein
protein.
Length = 74
Score = 22.2 bits (45), Expect = 5.7
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = -1
Query: 319 EFSRRKIISHYIYT*FKLKTALDQYDCSH 233
E +R H++ T +L T Y CSH
Sbjct: 14 ECHKRFTRDHHLKTHMRLHTGEKPYHCSH 42
>DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 5.7
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +3
Query: 738 NNSIKHRHANLYYAPKYFE 794
NN KH + LYY Y E
Sbjct: 99 NNYNKHNYNKLYYNINYIE 117
>DQ325075-1|ABD14089.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 5.7
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +3
Query: 738 NNSIKHRHANLYYAPKYFE 794
NN KH + LYY Y E
Sbjct: 99 NNYNKHNYNKLYYNINYIE 117
>DQ325074-1|ABD14088.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 5.7
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +3
Query: 738 NNSIKHRHANLYYAPKYFE 794
NN KH + LYY Y E
Sbjct: 99 NNYNKHNYNKLYYNINYIE 117
>DQ325073-1|ABD14087.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 5.7
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +3
Query: 738 NNSIKHRHANLYYAPKYFE 794
NN KH + LYY Y E
Sbjct: 99 NNYNKHNYNKLYYNINYIE 117
>DQ325072-1|ABD14086.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 5.7
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +3
Query: 738 NNSIKHRHANLYYAPKYFE 794
NN KH + LYY Y E
Sbjct: 99 NNYNKHNYNKLYYNINYIE 117
>DQ325071-1|ABD14085.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 5.7
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +3
Query: 738 NNSIKHRHANLYYAPKYFE 794
NN KH + LYY Y E
Sbjct: 99 NNYNKHNYNKLYYNINYIE 117
>DQ325070-1|ABD14084.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 5.7
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +3
Query: 738 NNSIKHRHANLYYAPKYFE 794
NN KH + LYY Y E
Sbjct: 99 NNYNKHNYNKLYYNINYIE 117
>DQ325069-1|ABD14083.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 5.7
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +3
Query: 738 NNSIKHRHANLYYAPKYFE 794
NN KH + LYY Y E
Sbjct: 99 NNYNKHNYNKLYYNINYIE 117
>DQ325068-1|ABD14082.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 22.2 bits (45), Expect = 5.7
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +3
Query: 738 NNSIKHRHANLYYAPKYFE 794
NN KH + LYY Y E
Sbjct: 99 NNYNKHNYNKLYYNINYIE 117
>AY569696-1|AAS86649.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 22.2 bits (45), Expect = 5.7
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +3
Query: 738 NNSIKHRHANLYYAPKYFE 794
NN KH + LYY Y E
Sbjct: 332 NNYNKHNYNKLYYNINYIE 350
>AY569695-1|AAS86648.1| 414|Apis mellifera complementary sex
determiner protein.
Length = 414
Score = 22.2 bits (45), Expect = 5.7
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = +3
Query: 738 NNSIKHRHANLYYAPKYFE 794
NN KH + LYY Y E
Sbjct: 332 NNYNKHNYNKLYYNINYIE 350
>AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate
receptor 1 protein.
Length = 953
Score = 22.2 bits (45), Expect = 5.7
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -2
Query: 666 LFINLVELLSSYYDIIKRHLCINSLITIIRLLFASNPNR 550
LFI+L+ L Y+II N + +I +F++N ++
Sbjct: 8 LFISLIILNDEIYNIIASPQLNNPTLFMIGGVFSNNKSK 46
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.4 bits (43), Expect = 10.0
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = -2
Query: 690 NLVL*NHTLFINLVELLSSYYDIIKRHLCINSLITIIRLLF 568
NLV + + V L+ SY++ I + + ++T++ L+F
Sbjct: 241 NLVAESMPTTSDAVPLIGSYFNCIMFMVASSVVLTVLVLIF 281
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.4 bits (43), Expect = 10.0
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = -2
Query: 690 NLVL*NHTLFINLVELLSSYYDIIKRHLCINSLITIIRLLF 568
NLV + + V L+ SY++ I + + ++T++ L+F
Sbjct: 241 NLVAESMPTTSDAVPLIGSYFNCIMFMVASSVVLTVLVLIF 281
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.4 bits (43), Expect = 10.0
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = -2
Query: 690 NLVL*NHTLFINLVELLSSYYDIIKRHLCINSLITIIRLLF 568
NLV + + V L+ SY++ I + + ++T++ L+F
Sbjct: 241 NLVAESMPTTSDAVPLIGSYFNCIMFMVASSVVLTVLVLIF 281
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,627
Number of Sequences: 438
Number of extensions: 4706
Number of successful extensions: 24
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -