Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt1c02
(1003 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|... 29 1.0
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 28 2.4
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop... 27 5.5
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 27 5.5
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c... 26 7.2
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 26 7.2
SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr 3... 26 7.2
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 26 9.6
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc... 26 9.6
>SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 29.1 bits (62), Expect = 1.0
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = +2
Query: 83 KENSEENSREMILQVRAFCEAEQQNQVLLIPLDNVRKRVAAIIGLSEKTVSTIIQAGKTA 262
+E+ + LQ+R + E ++N+ D VRK +I EKT S++ + KTA
Sbjct: 84 QESVSFQQKRTFLQIRKYLETIEENE-----FDKVRKSSDKLINEIEKTKSSLREDVKTA 138
Query: 263 AS 268
S
Sbjct: 139 LS 140
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 27.9 bits (59), Expect = 2.4
Identities = 18/85 (21%), Positives = 39/85 (45%)
Frame = +2
Query: 71 IREIKENSEENSREMILQVRAFCEAEQQNQVLLIPLDNVRKRVAAIIGLSEKTVSTIIQA 250
I E K+ E+ +E + +R +++N L LDN+R AAI + ++ +
Sbjct: 25 INEAKKRFNEH-KEKLGAIRGGGSLQEKNAELRAELDNIRNAQAAIRSSKQTLINKVKAQ 83
Query: 251 GKTAASTSKKIVTPGKSHPRSNKIK 325
+ K++ K+ P ++++
Sbjct: 84 DELLKKKVKELTAMKKTVPFKSEVE 108
>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
pyrophosphate phosphatase fusion 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 26.6 bits (56), Expect = 5.5
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Frame = +3
Query: 441 SNRTTEKGPVIFVNETYI----HSTYHSRSCWQSEEESGLFT 554
SN + EKGP F N +I H YH W+S GLF+
Sbjct: 376 SNVSEEKGPKSFANLAFITIFSHFFYHIDDMWRS--TLGLFS 415
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 26.6 bits (56), Expect = 5.5
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +2
Query: 86 ENSEENSREMILQVRAFCEAEQQNQVLLIPLDNVRKRVAAIIGLSE 223
E S SR+ I+Q+ + E + +I LD R+ + ++IGLSE
Sbjct: 578 EYSFSVSRQSIIQILSDVEPYEPFWKRIIQLDISRRHLDSLIGLSE 623
>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 547
Score = 26.2 bits (55), Expect = 7.2
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 492 IHSTYHSRSCWQSEEESGLFTSDS 563
+HS++HSRS + SGL S++
Sbjct: 91 VHSSFHSRSASRQRRRSGLSRSNA 114
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 26.2 bits (55), Expect = 7.2
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = +2
Query: 86 ENSEENSREMILQVRAFCEAEQQNQVLLIPLDN 184
+N+E ++E + +++A CE EQQ+ LL LD+
Sbjct: 963 DNAEAETKEKMDELQARCEKEQQS--LLAELDD 993
>SPCC1620.07c |||lunapark homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 334
Score = 26.2 bits (55), Expect = 7.2
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = +3
Query: 438 HSNRTTEKGPVIFVNETYIHSTYHSRSCWQSEEESGLFTSDSVGSRWIIAHAGIENGF 611
+SN TT+KGP I + I+++ R + + + L TS S ++ + + F
Sbjct: 262 NSNNTTQKGPNIISSPQVINASSPVRKAGKKKSKKALPTSPLSSSSPDASYNSVSDSF 319
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 25.8 bits (54), Expect = 9.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 423 CK*FV*CRQFLFYSIKLVNFMANSTNIKIIY 331
CK F F Y + L++ + N N+K+IY
Sbjct: 541 CKGFEGLETFFAYIVHLLHGVLNRNNVKLIY 571
>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1062
Score = 25.8 bits (54), Expect = 9.6
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = -1
Query: 631 ISKALLIKPFSIPACAIIHLLPTESEVKSPDSSSLCQQLL 512
+S+ L +K I A I+ LL T E+K+PD L +L+
Sbjct: 548 LSEDLSLKREIIQAHGILPLLETLREIKTPDVQLLLLKLI 587
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,859,642
Number of Sequences: 5004
Number of extensions: 77258
Number of successful extensions: 175
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 519268360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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