Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1c02
         (1003 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0218 + 14983132-14984658,14984762-14984869,14984964-149851...    30   2.5  
12_01_0445 - 3513733-3513819,3514392-3514613,3514730-3514999,351...    30   3.3  

>11_04_0218 +
           14983132-14984658,14984762-14984869,14984964-14985125,
           14985270-14985275
          Length = 600

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = +2

Query: 131 AFCEAEQQNQVLLIPLDNVRKRVAAIIGLSEKTVSTIIQAGKTAAS 268
           A  E+E+Q+Q+L + +D +R+  + I  ++  TVS   +  KT  S
Sbjct: 337 ASMESEKQSQILSVSIDELREHYSKIDQIAANTVSEARRFSKTHGS 382


>12_01_0445 -
           3513733-3513819,3514392-3514613,3514730-3514999,
           3515033-3517110,3517649-3517976,3519136-3519255,
           3519299-3519352,3520115-3520154,3520344-3520411
          Length = 1088

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +1

Query: 352 AIRHKIHQ-FYAVKQELPTLNKLLAVLKQDIRIEPLKKDLSYS*MRLISTAHTILEVVGK 528
           +I H + + F A+K+E   L   L V  +D++I  L++DLS       S  H  LE V K
Sbjct: 311 SIDHDLQEKFQAIKKENMDLKSKLLVQSKDLKILSLERDLSNQAAETASKQH--LENVKK 368

Query: 529 VRK 537
           + +
Sbjct: 369 IAR 371


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,207,578
Number of Sequences: 37544
Number of extensions: 430609
Number of successful extensions: 889
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2940399740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)