Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1c02
         (1003 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024817-6|AAY86298.2|  488|Caenorhabditis elegans Hypothetical ...    30   2.3  
Z30662-5|CAA83134.1|  363|Caenorhabditis elegans Hypothetical pr...    30   3.0  
AF022977-1|ABF71715.1| 1285|Caenorhabditis elegans Peroxidasin (...    30   3.0  
AC006777-7|AAK72306.2|  367|Caenorhabditis elegans Seven tm rece...    29   3.9  
Z82286-2|CAB05306.1|  397|Caenorhabditis elegans Hypothetical pr...    28   9.1  
U97193-15|AAB52443.1| 1932|Caenorhabditis elegans Hypothetical p...    28   9.1  

>AC024817-6|AAY86298.2|  488|Caenorhabditis elegans Hypothetical
           protein Y54G2A.42 protein.
          Length = 488

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
 Frame = +2

Query: 653 DYHNDMNSTNFLKWMNEKFIPNL-----PARSHV-VMDNAPYHCTQINKAPT 790
           DYH  M+S  + K+M EK +P +     P R  V V+DN   H     K PT
Sbjct: 284 DYHKSMDSEMYYKYM-EKVLPEIVAAAPPGRQPVMVIDNCAIHNQTTLKLPT 334


>Z30662-5|CAA83134.1|  363|Caenorhabditis elegans Hypothetical
           protein T16H12.8 protein.
          Length = 363

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = -1

Query: 538 SSSLCQQLLEWYVLWI*VSFTNMTGPFSVVRFECLVSTLQV--ICLMSAVPVLQHKIGEF 365
           SS L  QL+ W V+W+ ++  +MT    V R    +  +++  I   S  P      GE 
Sbjct: 74  SSGLFFQLIGWPVIWVFITKFSMTNALKVYRIMVFIGLIEITEIWGNSVFPGFVAVFGEV 133

Query: 364 Y 362
           Y
Sbjct: 134 Y 134


>AF022977-1|ABF71715.1| 1285|Caenorhabditis elegans Peroxidasin
           (drosophila peroxidase)homolog protein 1 protein.
          Length = 1285

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 674 STNFLKWMNEKFIPNLPARSHVVMDNAPYHC 766
           S N ++ +  K   NLPA SH  + + P+HC
Sbjct: 155 SHNRIQSLRTKLFDNLPALSHAHLHSNPWHC 185


>AC006777-7|AAK72306.2|  367|Caenorhabditis elegans Seven tm
           receptor protein 222 protein.
          Length = 367

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = -1

Query: 835 HFLYQHVRLSIYSQHGXSFIYLGTVVWSIIHNHMRPCWQIWNKFFIHPLEEIS 677
           HF+Y+++  +  SQ   SF     V+W ++       W     FF  P EE++
Sbjct: 113 HFIYRYLA-ACGSQLANSFNTWKIVIWFLLPLSFGAIWSFDGYFFCRPTEEVT 164


>Z82286-2|CAB05306.1|  397|Caenorhabditis elegans Hypothetical
           protein W02A2.3 protein.
          Length = 397

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 13/40 (32%), Positives = 16/40 (40%)
 Frame = +3

Query: 351 CYSP*NSPILCCKTGTADIKQITCSVETRHSNRTTEKGPV 470
           C  P N P   C T     +QI  S+       TT + PV
Sbjct: 178 CPCPQNQPACTCSTNNQQNEQILVSISCCQQQETTTQAPV 217


>U97193-15|AAB52443.1| 1932|Caenorhabditis elegans Hypothetical
            protein C06A5.1 protein.
          Length = 1932

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +2

Query: 176  LDNVRKRV--AAIIGLSEKTVSTIIQAGKTAASTSKKIVTPGKSHP 307
            L +V +RV  AA+IGLSE      I   + +  T++K++   ++ P
Sbjct: 1165 LKSVEQRVVDAALIGLSEHDAQEFILVSRMSKETAEKVIKMAENMP 1210


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,163,914
Number of Sequences: 27780
Number of extensions: 425785
Number of successful extensions: 990
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2626021738
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)