Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1c02
         (1003 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    29   0.066
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    27   0.27 
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    23   4.3  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    23   4.3  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    23   4.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   5.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   5.7  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   10.0 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   10.0 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   10.0 

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 29.1 bits (62), Expect = 0.066
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 417 TCSVETRHSNRTTEKGPVIFVNETY 491
           T + E +++N+  EKGPV  +NE Y
Sbjct: 140 TLTQEPKNTNKFLEKGPVALINELY 164


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 27.1 bits (57), Expect = 0.27
 Identities = 12/53 (22%), Positives = 27/53 (50%)
 Frame = +2

Query: 140  EAEQQNQVLLIPLDNVRKRVAAIIGLSEKTVSTIIQAGKTAASTSKKIVTPGK 298
            +++QQ Q   I  +   K +     + +++    +  GKT  ++  K+V+PG+
Sbjct: 980  QSQQQQQQQTIVTNQAGKSILQTANIKQQSPQQHVLPGKTLLASQIKLVSPGQ 1032


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -2

Query: 288 VTIFFEVLAAVFPACIIVDTVFSDRPI 208
           +T+ F VLA V    +++ +VF+ RP+
Sbjct: 41  LTLGFLVLATVLGNALVILSVFTYRPL 67


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -2

Query: 288 VTIFFEVLAAVFPACIIVDTVFSDRPI 208
           +T+ F VLA V    +++ +VF+ RP+
Sbjct: 41  LTLGFLVLATVLGNALVILSVFTYRPL 67


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -2

Query: 288 VTIFFEVLAAVFPACIIVDTVFSDRPI 208
           +T+ F VLA V    +++ +VF+ RP+
Sbjct: 41  LTLGFLVLATVLGNALVILSVFTYRPL 67


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 5.7
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -1

Query: 772 LGTVVWSIIHNHMRPCWQIWNKFFIHPLEE 683
           +G V W ++    RP W   N+  I  +E+
Sbjct: 824 MGIVCWEVMSYGERPYWNWSNQDVIKSIEK 853


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 5.7
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 731 SHVVMDNAPYHCTQINKAPTMLGV 802
           +H ++ +    C Q+ KAP  LG+
Sbjct: 797 NHWILRSNVQQCEQLEKAPNTLGL 820


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 10.0
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = -2

Query: 792 MVGALFIWVQW 760
           M+G +F+W+ W
Sbjct: 214 MIGTIFLWLFW 224


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 10.0
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 66   TLHIREINKNLDNRTL*QHLT 4
            TLH R  + NLD   L +H T
Sbjct: 1438 TLHYRTAHGNLDELQLSRHAT 1458


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 10.0
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 66   TLHIREINKNLDNRTL*QHLT 4
            TLH R  + NLD   L +H T
Sbjct: 1434 TLHYRTAHGNLDELQLSRHAT 1454


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 255,007
Number of Sequences: 438
Number of extensions: 5112
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 33258225
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)