Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1c01
         (831 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    25   0.86 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   4.6  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   4.6  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 25.0 bits (52), Expect = 0.86
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -3

Query: 259 KDTKSKWMWNRPNLHFPSASFS 194
           K T+ +WM   PN+  P++++S
Sbjct: 352 KKTRLRWMMEIPNVTLPTSTYS 373


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 540 MCFAISLSASVTYI 581
           +C AISLSA+VT +
Sbjct: 740 LCVAISLSATVTLV 753


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 540 MCFAISLSASVTYI 581
           +C AISLSA+VT +
Sbjct: 830 LCVAISLSATVTLV 843


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,337
Number of Sequences: 438
Number of extensions: 5196
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)