Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt1b24
(713 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78066-8|CAE48546.1| 204|Caenorhabditis elegans Hypothetical pr... 85 4e-17
Z78066-7|CAE48544.1| 570|Caenorhabditis elegans Hypothetical pr... 85 4e-17
Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical pr... 85 4e-17
Z78066-5|CAB01523.1| 222|Caenorhabditis elegans Hypothetical pr... 85 4e-17
Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical pr... 85 4e-17
Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical pr... 83 2e-16
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 31 0.62
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 31 0.62
D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein. 31 0.62
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 31 0.62
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 31 0.62
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 29 2.5
AL132864-5|CAH60767.2| 281|Caenorhabditis elegans Hypothetical ... 29 4.4
Z93384-3|CAB07634.3| 1341|Caenorhabditis elegans Hypothetical pr... 28 7.6
Z93384-2|CAE54901.1| 1320|Caenorhabditis elegans Hypothetical pr... 28 7.6
>Z78066-8|CAE48546.1| 204|Caenorhabditis elegans Hypothetical
protein W06A7.3e protein.
Length = 204
Score = 85.4 bits (202), Expect = 4e-17
Identities = 40/135 (29%), Positives = 72/135 (53%)
Frame = +3
Query: 306 FRLYKNVLQAVQKTNDGHPFKWLLEAEVSVSXXXXXXXXXXXXXXXXXXXYELRRLFLVE 485
FR++K V ++KT+ HPF +L ++++ +L++L VE
Sbjct: 58 FRVFKKVEAQIKKTDSEHPFSEILAQDLTLPQEKVHAQADVFVEHATCIANKLKKLVFVE 117
Query: 486 DLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDANLELARAKI 665
++S+KFG++LW LTY+ + F+G TL ILG + +F++PK YE N+ +D +L +
Sbjct: 118 SPLESIKFGLVLWSLTYIASWFSGFTLAILGLLGVFSVPKVYESNQEAIDPHLATISGHL 177
Query: 666 NEITAKVRAAVPLGR 710
+ + +P R
Sbjct: 178 KNVQNIIDEKLPFLR 192
>Z78066-7|CAE48544.1| 570|Caenorhabditis elegans Hypothetical
protein W06A7.3d protein.
Length = 570
Score = 85.4 bits (202), Expect = 4e-17
Identities = 40/135 (29%), Positives = 72/135 (53%)
Frame = +3
Query: 306 FRLYKNVLQAVQKTNDGHPFKWLLEAEVSVSXXXXXXXXXXXXXXXXXXXYELRRLFLVE 485
FR++K V ++KT+ HPF +L ++++ +L++L VE
Sbjct: 424 FRVFKKVEAQIKKTDSEHPFSEILAQDLTLPQEKVHAQADVFVEHATCIANKLKKLVFVE 483
Query: 486 DLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDANLELARAKI 665
++S+KFG++LW LTY+ + F+G TL ILG + +F++PK YE N+ +D +L +
Sbjct: 484 SPLESIKFGLVLWSLTYIASWFSGFTLAILGLLGVFSVPKVYESNQEAIDPHLATISGHL 543
Query: 666 NEITAKVRAAVPLGR 710
+ + +P R
Sbjct: 544 KNVQNIIDEKLPFLR 558
>Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical protein
W06A7.3c protein.
Length = 2484
Score = 85.4 bits (202), Expect = 4e-17
Identities = 40/135 (29%), Positives = 72/135 (53%)
Frame = +3
Query: 306 FRLYKNVLQAVQKTNDGHPFKWLLEAEVSVSXXXXXXXXXXXXXXXXXXXYELRRLFLVE 485
FR++K V ++KT+ HPF +L ++++ +L++L VE
Sbjct: 2338 FRVFKKVEAQIKKTDSEHPFSEILAQDLTLPQEKVHAQADVFVEHATCIANKLKKLVFVE 2397
Query: 486 DLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDANLELARAKI 665
++S+KFG++LW LTY+ + F+G TL ILG + +F++PK YE N+ +D +L +
Sbjct: 2398 SPLESIKFGLVLWSLTYIASWFSGFTLAILGLLGVFSVPKVYESNQEAIDPHLATISGHL 2457
Query: 666 NEITAKVRAAVPLGR 710
+ + +P R
Sbjct: 2458 KNVQNIIDEKLPFLR 2472
>Z78066-5|CAB01523.1| 222|Caenorhabditis elegans Hypothetical
protein W06A7.3b protein.
Length = 222
Score = 85.4 bits (202), Expect = 4e-17
Identities = 40/135 (29%), Positives = 72/135 (53%)
Frame = +3
Query: 306 FRLYKNVLQAVQKTNDGHPFKWLLEAEVSVSXXXXXXXXXXXXXXXXXXXYELRRLFLVE 485
FR++K V ++KT+ HPF +L ++++ +L++L VE
Sbjct: 76 FRVFKKVEAQIKKTDSEHPFSEILAQDLTLPQEKVHAQADVFVEHATCIANKLKKLVFVE 135
Query: 486 DLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDANLELARAKI 665
++S+KFG++LW LTY+ + F+G TL ILG + +F++PK YE N+ +D +L +
Sbjct: 136 SPLESIKFGLVLWSLTYIASWFSGFTLAILGLLGVFSVPKVYESNQEAIDPHLATISGHL 195
Query: 666 NEITAKVRAAVPLGR 710
+ + +P R
Sbjct: 196 KNVQNIIDEKLPFLR 210
>Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical protein
W06A7.3a protein.
Length = 2607
Score = 85.4 bits (202), Expect = 4e-17
Identities = 40/135 (29%), Positives = 72/135 (53%)
Frame = +3
Query: 306 FRLYKNVLQAVQKTNDGHPFKWLLEAEVSVSXXXXXXXXXXXXXXXXXXXYELRRLFLVE 485
FR++K V ++KT+ HPF +L ++++ +L++L VE
Sbjct: 2461 FRVFKKVEAQIKKTDSEHPFSEILAQDLTLPQEKVHAQADVFVEHATCIANKLKKLVFVE 2520
Query: 486 DLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDANLELARAKI 665
++S+KFG++LW LTY+ + F+G TL ILG + +F++PK YE N+ +D +L +
Sbjct: 2521 SPLESIKFGLVLWSLTYIASWFSGFTLAILGLLGVFSVPKVYESNQEAIDPHLATISGHL 2580
Query: 666 NEITAKVRAAVPLGR 710
+ + +P R
Sbjct: 2581 KNVQNIIDEKLPFLR 2595
>Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical protein
W06A7.3f protein.
Length = 2488
Score = 83.0 bits (196), Expect = 2e-16
Identities = 39/135 (28%), Positives = 71/135 (52%)
Frame = +3
Query: 306 FRLYKNVLQAVQKTNDGHPFKWLLEAEVSVSXXXXXXXXXXXXXXXXXXXYELRRLFLVE 485
F ++K V ++KT+ HPF +L ++++ +L++L VE
Sbjct: 2342 FSVFKKVEAQIKKTDSEHPFSEILAQDLTLPQEKVHAQADVFVEHATCIANKLKKLVFVE 2401
Query: 486 DLVDSLKFGVLLWCLTYVGACFNGITLIILGWIALFTLPKAYEMNKAQVDANLELARAKI 665
++S+KFG++LW LTY+ + F+G TL ILG + +F++PK YE N+ +D +L +
Sbjct: 2402 SPLESIKFGLVLWSLTYIASWFSGFTLAILGLLGVFSVPKVYESNQEAIDPHLATISGHL 2461
Query: 666 NEITAKVRAAVPLGR 710
+ + +P R
Sbjct: 2462 KNVQNIIDEKLPFLR 2476
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 31.5 bits (68), Expect = 0.62
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +3
Query: 612 EMNKAQVDANLELARAKINEITAK 683
E KA++DAN+E RAKI+EI K
Sbjct: 2593 EKLKAEIDANIEETRAKISEIAGK 2616
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 31.5 bits (68), Expect = 0.62
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +3
Query: 612 EMNKAQVDANLELARAKINEITAK 683
E KA++DAN+E RAKI+EI K
Sbjct: 2593 EKLKAEIDANIEETRAKISEIAGK 2616
>D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.
Length = 1518
Score = 31.5 bits (68), Expect = 0.62
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +3
Query: 612 EMNKAQVDANLELARAKINEITAK 683
E KA++DAN+E RAKI+EI K
Sbjct: 407 EKLKAEIDANIEETRAKISEIAGK 430
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 31.5 bits (68), Expect = 0.62
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +3
Query: 612 EMNKAQVDANLELARAKINEITAK 683
E KA++DAN+E RAKI+EI K
Sbjct: 2593 EKLKAEIDANIEETRAKISEIAGK 2616
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 31.5 bits (68), Expect = 0.62
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +3
Query: 612 EMNKAQVDANLELARAKINEITAK 683
E KA++DAN+E RAKI+EI K
Sbjct: 2593 EKLKAEIDANIEETRAKISEIAGK 2616
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -1
Query: 590 QRYPTEDDERDPVEARPHVREAPQQHAELQRVHQVLHQ 477
Q+Y ++ PV+ RP V++ Q H E Q+ ++L Q
Sbjct: 267 QQYKPPPQQQPPVQMRPPVQQPQQNHQEEQQNAELLMQ 304
>AL132864-5|CAH60767.2| 281|Caenorhabditis elegans Hypothetical
protein Y53H1A.5 protein.
Length = 281
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -1
Query: 599 QREQRYPTEDDERDPVEARPHVREAPQQHAELQR 498
+RE R ED R P+E + ++ E+ +QHA +R
Sbjct: 162 RREMRQKMEDSGRLPLERQKYMHESRRQHALKRR 195
>Z93384-3|CAB07634.3| 1341|Caenorhabditis elegans Hypothetical protein
H08M01.2b protein.
Length = 1341
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -2
Query: 640 LASTCALFIS*AFGSVNSAIQP--RMMSVIPLKHAPTYVRHHSSTPN 506
LA+ A+ S A+ VN A+ ++ PLK PT+ + SSTP+
Sbjct: 898 LATPEAVDFSPAYSLVNDAVHTVIQVNGSTPLKSPPTFHSYESSTPD 944
>Z93384-2|CAE54901.1| 1320|Caenorhabditis elegans Hypothetical protein
H08M01.2a protein.
Length = 1320
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -2
Query: 640 LASTCALFIS*AFGSVNSAIQP--RMMSVIPLKHAPTYVRHHSSTPN 506
LA+ A+ S A+ VN A+ ++ PLK PT+ + SSTP+
Sbjct: 898 LATPEAVDFSPAYSLVNDAVHTVIQVNGSTPLKSPPTFHSYESSTPD 944
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,176,570
Number of Sequences: 27780
Number of extensions: 144755
Number of successful extensions: 682
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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