Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1b23
         (738 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical...    31   0.85 
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical...    31   0.85 
AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical ...    29   2.6  
U80845-1|AAK39181.1| 1217|Caenorhabditis elegans Prion-like-(q/n...    29   3.4  
Z82068-2|CAB04898.2|  233|Caenorhabditis elegans Hypothetical pr...    28   6.0  

>AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical
           protein Y43F8B.3b protein.
          Length = 1398

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -1

Query: 636 RTSPASSSFRRCALSRKCAAGSDL*TTTALCVG 538
           +T  AS++F  C L+  C  GSDL +TT  C G
Sbjct: 866 QTCSASANFNTCPLNHWCHIGSDL-STTVCCPG 897


>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
            protein Y43F8B.3a protein.
          Length = 1816

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -1

Query: 636  RTSPASSSFRRCALSRKCAAGSDL*TTTALCVG 538
            +T  AS++F  C L+  C  GSDL +TT  C G
Sbjct: 1284 QTCSASANFNTCPLNHWCHIGSDL-STTVCCPG 1315


>AF043706-1|AAB97603.3| 1623|Caenorhabditis elegans Hypothetical
            protein ZC123.3 protein.
          Length = 1623

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
 Frame = -2

Query: 713  FAK*NIMLEKCRSVVTTEVAECSADEGPRQPVPLSEDVLSLVNVQQGQIFRQPLRCALV- 537
            F + N+  E    + T  V ECS ++  + P PL       +N    QI+  P+    V 
Sbjct: 1444 FLRNNLKREGVSELTTASVTECSPEKKAKLPNPLDLASFPFLNTFDIQIYGTPIAFLQVP 1503

Query: 536  --IRVNVEDGQTPGQ 498
              I+  + D  T G+
Sbjct: 1504 DEIKKQITDDITAGK 1518


>U80845-1|AAK39181.1| 1217|Caenorhabditis elegans
            Prion-like-(q/n-rich)-domain-bearingprotein protein 15
            protein.
          Length = 1217

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/48 (25%), Positives = 28/48 (58%)
 Frame = -2

Query: 647  SADEGPRQPVPLSEDVLSLVNVQQGQIFRQPLRCALVIRVNVEDGQTP 504
            S  +GP  P  + + ++++  +QQ  + +QPL+ +    ++++  QTP
Sbjct: 861  SMQQGPHNPQNIPDQMMNMQQMQQDPMSQQPLQESPQPNLHLQHHQTP 908


>Z82068-2|CAB04898.2|  233|Caenorhabditis elegans Hypothetical
           protein W04A4.4 protein.
          Length = 233

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 255 NHDKCRVSEFYDNVRTLKTVLTVDCPWLNFESNR 356
           N+D+ RV EF    R  K +LTV  P +  ES +
Sbjct: 88  NNDENRVWEFIQENRNSKFILTVSTPTIEEESEK 121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,561,462
Number of Sequences: 27780
Number of extensions: 389413
Number of successful extensions: 971
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)