Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt1b14
(768 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 30 0.42
SPBC16H5.15 |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.97
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo... 28 1.3
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 27 3.0
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch... 27 3.9
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 26 5.2
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 26 6.8
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 25 9.0
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ... 25 9.0
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 25 9.0
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 29.9 bits (64), Expect = 0.42
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Frame = +1
Query: 427 QPKR-EALRRST--QVLTPVIDLKSKSKDEEETNSSSPKIQP 543
QP E+L ++T Q+ TP+ ++K+ KD+EE S + P
Sbjct: 435 QPNNPESLAQTTLLQISTPISNIKANGKDDEEKKEESDLVTP 476
>SPBC16H5.15 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 166
Score = 28.7 bits (61), Expect = 0.97
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 433 KREAL-RRSTQVLTPVIDLKSKSKDEEETNSSSPKIQPKTITASLNVRDFD 582
KRE + ++ + L +L+ K+ D+E SS P+ PKT + ++D +
Sbjct: 74 KRELMWKKEKEQLLKEKELRQKALDKERMVSSKPETNPKTPISLKELKDIE 124
>SPBC800.09 |sum2||G2/M transition checkpoint protein
Sum2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 28.3 bits (60), Expect = 1.3
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Frame = +1
Query: 481 DLKSKSKDEEETNSSSPKIQPKTITASL--NVRDFDWN---VANEYDPMWPNDY 627
D+K +E T S+P +QP A + N ++WN A P+ PN Y
Sbjct: 70 DVKDLRIEEPATTPSAPPVQPPNDPAIIGSNSGQYNWNQAQTAQPPQPVQPNPY 123
>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -1
Query: 102 PQLVSSVAHDFGFFKILNCLIIFMYYLFHLHKN 4
P+ V D G F +L L F +F LHKN
Sbjct: 110 PKAVDDATADVGIFLMLGALRGFNQGIFELHKN 142
>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 26.6 bits (56), Expect = 3.9
Identities = 12/46 (26%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Frame = -1
Query: 138 VIFTSFLYFYLKPQLVSSVAHDFGFF----KILNCLIIFMYYLFHL 13
V+F + + + +P+L++ + H+ G + ++N +I + LFHL
Sbjct: 312 VLFDTLVKNHTEPELIAILGHELGHWYMSHNLINTIIDYGMSLFHL 357
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 26.2 bits (55), Expect = 5.2
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 439 EALRRSTQVLTPVIDLKSKSKDEEETNSSSPKIQPKTITASLNVR 573
E+LR + TP+ ++ + NSS K P++ ++S N R
Sbjct: 216 ESLREKRRTYTPLSEISNGLNSNGVENSSITKSSPRSSSSSNNER 260
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 25.8 bits (54), Expect = 6.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 496 SKDEEETNSSSPKIQPKTITASL 564
S EE+ NS SP IQP T +L
Sbjct: 8 SDSEEQENSQSPNIQPLLHTENL 30
>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 681
Score = 25.4 bits (53), Expect = 9.0
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 430 PKREALRRSTQVLTPVIDLKSKSKDEEETNSSSP 531
PKR A RS ++ + KSKD + S+P
Sbjct: 211 PKRPAFTRSATSPDKILPTRIKSKDTVSSGDSTP 244
>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 664
Score = 25.4 bits (53), Expect = 9.0
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +2
Query: 176 SGLIILDIYVVTWLWCLYGT 235
+ LII +++ W W +YGT
Sbjct: 556 AALIITAAFIILWPWPMYGT 575
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 331 YLSRHKETSLMTGLLRFTKC 272
Y S KE SL+TG L+F C
Sbjct: 1016 YASELKENSLLTGELKFGDC 1035
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,946,879
Number of Sequences: 5004
Number of extensions: 57886
Number of successful extensions: 193
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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