Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt1b14
(768 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0497 - 18096299-18096496,18096586-18096675,18096809-180969... 33 0.19
08_02_1073 - 24117834-24118037,24118122-24118211,24118299-241184... 31 1.3
03_05_0258 - 22442527-22443927 30 1.8
01_01_0322 - 2589074-2589121,2589214-2589296,2589414-2589492,258... 29 5.4
12_02_0522 - 19960092-19960595,19962737-19962880,19963042-199631... 28 7.1
03_04_0132 + 17580131-17581054,17581488-17582036 28 7.1
09_04_0548 - 18469636-18470037,18471164-18472705,18474052-184744... 28 9.4
09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540 28 9.4
01_05_0166 + 18844468-18845184,18847394-18847690 28 9.4
>09_04_0497 -
18096299-18096496,18096586-18096675,18096809-18096914,
18097005-18097179,18097263-18097365,18097458-18097712,
18097791-18097868,18097986-18098078,18098179-18098319,
18098406-18098510,18098658-18098738,18098825-18098866,
18098966-18099082,18099208-18099351,18099485-18099568,
18099683-18099803,18099863-18099988,18100106-18100179,
18100388-18100657
Length = 800
Score = 33.5 bits (73), Expect = 0.19
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = +1
Query: 487 KSKSKDEEETNSSSPKIQPKTITASLNVRDFDWNVANEYDPMWPNDYEKVAK 642
+ + K+ EE K + KTIT +DW +ANE P+W + ++V K
Sbjct: 315 EEEPKEGEEATEGEKKKKKKTITEKY----WDWELANETKPIWMRNPKEVEK 362
>08_02_1073 -
24117834-24118037,24118122-24118211,24118299-24118404,
24118477-24118648,24118737-24118839,24118927-24119181,
24119259-24119336,24119449-24119541,24119660-24119800,
24119882-24119986,24120135-24120212,24120297-24120341,
24120463-24120579,24120685-24120828,24120934-24121017,
24121139-24121232,24121322-24121447,24121585-24121658,
24121870-24122098,24123124-24123611,24123702-24123749,
24123841-24124077,24124368-24124404,24125011-24125018
Length = 1051
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +1
Query: 469 TPVIDLKSKSKDEEETNSSSPKIQPKTITASLNVRDFDWNVANEYDPMWPNDYEKVAK 642
T ++ ++K+ EE K + KTIT +DW +ANE P+W +++ K
Sbjct: 560 TVEVEEDEEAKEGEEAKEGEQK-KKKTITEKY----WDWELANETKPIWMRSPKEIEK 612
>03_05_0258 - 22442527-22443927
Length = 466
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +1
Query: 469 TPVIDL-KSKSKDEEETNSSSPKIQPKTITASLNVRDFDWNVANEYDPMWPNDYEKVA 639
TP ID+ K D+ + P++ + + L + FDW+ PM P+ + VA
Sbjct: 330 TPAIDVCKGLVGDKAVVSIYDPQVTEEQVQRDLVMNKFDWDHPRHLQPMSPSSAKHVA 387
>01_01_0322 -
2589074-2589121,2589214-2589296,2589414-2589492,
2589622-2589716,2590198-2590330,2590601-2590685,
2591040-2591163,2591297-2591372,2594305-2594319
Length = 245
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/63 (26%), Positives = 32/63 (50%)
Frame = +1
Query: 475 VIDLKSKSKDEEETNSSSPKIQPKTITASLNVRDFDWNVANEYDPMWPNDYEKVAKELQA 654
VI ++ ++ E+ S+ + +T S ++D+ NV Y+P+W KVA QA
Sbjct: 116 VIACVGETLEQRESGSTMDVVAAQTKAISERIKDWT-NVVVAYEPVWAIGTGKVATPDQA 174
Query: 655 KRL 663
+ +
Sbjct: 175 QEV 177
>12_02_0522 -
19960092-19960595,19962737-19962880,19963042-19963131,
19963215-19963320,19963400-19963574,19963849-19963951,
19964382-19964636,19964726-19964803,19964908-19965000,
19965091-19965222,19965898-19966002,19966127-19966201,
19966284-19966340,19966419-19966532,19966613-19966756,
19966886-19966969,19967071-19967164,19967244-19967369,
19967507-19967580,19967672-19967875,19968234-19968388,
19968860-19968947,19969505-19969730,19970235-19970286,
19970766-19970958,19973221-19973314,19973744-19973788,
19974874-19974896
Length = 1210
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +1
Query: 505 EEETNSSSPKIQPKTITASLNVRDFDWNVANEYDPMWPNDYEKVAKE 645
E + K + K T ++ + +DW + NE P+W + +V+ E
Sbjct: 580 EAKEGDDETKTEVKKKTKTVVEKYWDWELTNETQPIWLRNPREVSTE 626
>03_04_0132 + 17580131-17581054,17581488-17582036
Length = 490
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +1
Query: 469 TPVIDL-KSKSKDEEETNSSSPKIQPKTITASLNVRDFDWNVANEYDPMWPNDYEKVA 639
TP ID+ K D+ + + P++ + L + FDW+ PM P ++V+
Sbjct: 354 TPAIDVCKGLIGDKAKVSIYDPQVTEDQVQRDLAMSKFDWDHPVHLQPMSPTAIKQVS 411
>09_04_0548 -
18469636-18470037,18471164-18472705,18474052-18474474,
18474874-18474999
Length = 830
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +1
Query: 487 KSKSKDEEETNSSSPKIQPKTITASLNVRDFDWNVANEYDPMWPNDYEKVAKE 645
K + DEE+ K + K ++ +WNV N+ P+W E++ KE
Sbjct: 235 KVEDVDEEKEEKEKKKKKIKEVS-------HEWNVMNKQKPIWLRKPEEITKE 280
>09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540
Length = 699
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +1
Query: 487 KSKSKDEEETNSSSPKIQPKTITASLNVRDFDWNVANEYDPMWPNDYEKVAKE 645
K + DEE+ K + K ++ +WNV N+ P+W E++ KE
Sbjct: 235 KVEDVDEEKEEKEKKKKKIKEVS-------HEWNVMNKQKPIWLRKPEEITKE 280
>01_05_0166 + 18844468-18845184,18847394-18847690
Length = 337
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 589 VANEYDPMWPNDYEKVAKE 645
V EYDP PNDYE K+
Sbjct: 61 VMEEYDPARPNDYEDYRKD 79
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,734,549
Number of Sequences: 37544
Number of extensions: 318928
Number of successful extensions: 832
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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