Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt1b14
(768 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC039322-1|AAH39322.1| 401|Homo sapiens RBM17 protein protein. 68 4e-11
BC007871-1|AAH07871.1| 401|Homo sapiens RNA binding motif prote... 68 4e-11
AL157395-8|CAH73602.1| 401|Homo sapiens RNA binding motif prote... 68 4e-11
AL157395-7|CAH73601.1| 221|Homo sapiens RNA binding motif prote... 68 4e-11
AL157395-6|CAH73600.1| 212|Homo sapiens RNA binding motif prote... 68 4e-11
AF542550-1|AAQ09533.1| 401|Homo sapiens unknown protein. 68 4e-11
BC009064-1|AAH09064.1| 369|Homo sapiens RBM17 protein protein. 56 2e-07
AL157395-5|CAH73599.1| 243|Homo sapiens RNA binding motif prote... 48 5e-05
AL157395-9|CAH73603.1| 224|Homo sapiens RNA binding motif prote... 39 0.023
X15187-1|CAA33261.1| 803|Homo sapiens precursor polypeptide (AA... 30 7.9
BC066656-1|AAH66656.1| 803|Homo sapiens heat shock protein 90kD... 30 7.9
AY040226-1|AAK74072.1| 782|Homo sapiens heat shock protein gp96... 30 7.9
AJ890084-1|CAI64497.1| 802|Homo sapiens tumor rejection antigen... 30 7.9
AB209534-1|BAD92771.1| 576|Homo sapiens tumor rejection antigen... 30 7.9
>BC039322-1|AAH39322.1| 401|Homo sapiens RBM17 protein protein.
Length = 401
Score = 67.7 bits (158), Expect = 4e-11
Identities = 44/122 (36%), Positives = 64/122 (52%), Gaps = 4/122 (3%)
Frame = +1
Query: 307 MSLYDDLDTIKTRTTEKVAAWSSGIXXXXXXXXXXXAAVTQPKREALRRSTQVLTPVIDL 486
MSLYDDL ++T + K WS AA+TQ K + ++ST VL PVIDL
Sbjct: 1 MSLYDDLG-VET-SDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQST-VLAPVIDL 57
Query: 487 K-SKSKDEEETNSSSPKIQP---KTITASLNVRDFDWNVANEYDPMWPNDYEKVAKELQA 654
K S D+ + + P + + + + + +A+EYDPM+PNDYEKV K +
Sbjct: 58 KRGGSSDDRQIVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYEKVVKRQRE 117
Query: 655 KR 660
+R
Sbjct: 118 ER 119
>BC007871-1|AAH07871.1| 401|Homo sapiens RNA binding motif protein
17 protein.
Length = 401
Score = 67.7 bits (158), Expect = 4e-11
Identities = 44/122 (36%), Positives = 64/122 (52%), Gaps = 4/122 (3%)
Frame = +1
Query: 307 MSLYDDLDTIKTRTTEKVAAWSSGIXXXXXXXXXXXAAVTQPKREALRRSTQVLTPVIDL 486
MSLYDDL ++T + K WS AA+TQ K + ++ST VL PVIDL
Sbjct: 1 MSLYDDLG-VET-SDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQST-VLAPVIDL 57
Query: 487 K-SKSKDEEETNSSSPKIQP---KTITASLNVRDFDWNVANEYDPMWPNDYEKVAKELQA 654
K S D+ + + P + + + + + +A+EYDPM+PNDYEKV K +
Sbjct: 58 KRGGSSDDRQIVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYEKVVKRQRE 117
Query: 655 KR 660
+R
Sbjct: 118 ER 119
>AL157395-8|CAH73602.1| 401|Homo sapiens RNA binding motif protein
17 protein.
Length = 401
Score = 67.7 bits (158), Expect = 4e-11
Identities = 44/122 (36%), Positives = 64/122 (52%), Gaps = 4/122 (3%)
Frame = +1
Query: 307 MSLYDDLDTIKTRTTEKVAAWSSGIXXXXXXXXXXXAAVTQPKREALRRSTQVLTPVIDL 486
MSLYDDL ++T + K WS AA+TQ K + ++ST VL PVIDL
Sbjct: 1 MSLYDDLG-VET-SDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQST-VLAPVIDL 57
Query: 487 K-SKSKDEEETNSSSPKIQP---KTITASLNVRDFDWNVANEYDPMWPNDYEKVAKELQA 654
K S D+ + + P + + + + + +A+EYDPM+PNDYEKV K +
Sbjct: 58 KRGGSSDDRQIVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYEKVVKRQRE 117
Query: 655 KR 660
+R
Sbjct: 118 ER 119
>AL157395-7|CAH73601.1| 221|Homo sapiens RNA binding motif protein
17 protein.
Length = 221
Score = 67.7 bits (158), Expect = 4e-11
Identities = 44/122 (36%), Positives = 64/122 (52%), Gaps = 4/122 (3%)
Frame = +1
Query: 307 MSLYDDLDTIKTRTTEKVAAWSSGIXXXXXXXXXXXAAVTQPKREALRRSTQVLTPVIDL 486
MSLYDDL ++T + K WS AA+TQ K + ++ST VL PVIDL
Sbjct: 1 MSLYDDLG-VET-SDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQST-VLAPVIDL 57
Query: 487 K-SKSKDEEETNSSSPKIQP---KTITASLNVRDFDWNVANEYDPMWPNDYEKVAKELQA 654
K S D+ + + P + + + + + +A+EYDPM+PNDYEKV K +
Sbjct: 58 KRGGSSDDRQIVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYEKVVKRQRE 117
Query: 655 KR 660
+R
Sbjct: 118 ER 119
>AL157395-6|CAH73600.1| 212|Homo sapiens RNA binding motif protein
17 protein.
Length = 212
Score = 67.7 bits (158), Expect = 4e-11
Identities = 44/122 (36%), Positives = 64/122 (52%), Gaps = 4/122 (3%)
Frame = +1
Query: 307 MSLYDDLDTIKTRTTEKVAAWSSGIXXXXXXXXXXXAAVTQPKREALRRSTQVLTPVIDL 486
MSLYDDL ++T + K WS AA+TQ K + ++ST VL PVIDL
Sbjct: 1 MSLYDDLG-VET-SDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQST-VLAPVIDL 57
Query: 487 K-SKSKDEEETNSSSPKIQP---KTITASLNVRDFDWNVANEYDPMWPNDYEKVAKELQA 654
K S D+ + + P + + + + + +A+EYDPM+PNDYEKV K +
Sbjct: 58 KRGGSSDDRQIVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYEKVVKRQRE 117
Query: 655 KR 660
+R
Sbjct: 118 ER 119
>AF542550-1|AAQ09533.1| 401|Homo sapiens unknown protein.
Length = 401
Score = 67.7 bits (158), Expect = 4e-11
Identities = 44/122 (36%), Positives = 64/122 (52%), Gaps = 4/122 (3%)
Frame = +1
Query: 307 MSLYDDLDTIKTRTTEKVAAWSSGIXXXXXXXXXXXAAVTQPKREALRRSTQVLTPVIDL 486
MSLYDDL ++T + K WS AA+TQ K + ++ST VL PVIDL
Sbjct: 1 MSLYDDLG-VET-SDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQST-VLAPVIDL 57
Query: 487 K-SKSKDEEETNSSSPKIQP---KTITASLNVRDFDWNVANEYDPMWPNDYEKVAKELQA 654
K S D+ + + P + + + + + +A+EYDPM+PNDYEKV K +
Sbjct: 58 KRGGSSDDRQIVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEYDPMFPNDYEKVVKRQRE 117
Query: 655 KR 660
+R
Sbjct: 118 ER 119
>BC009064-1|AAH09064.1| 369|Homo sapiens RBM17 protein protein.
Length = 369
Score = 55.6 bits (128), Expect = 2e-07
Identities = 33/86 (38%), Positives = 50/86 (58%), Gaps = 4/86 (4%)
Frame = +1
Query: 415 AAVTQPKREALRRSTQVLTPVIDLK-SKSKDEEETNSSSPKIQP---KTITASLNVRDFD 582
AA+TQ K + ++ST VL PVIDLK S D+ + + P + + + + +
Sbjct: 3 AALTQAKSQRTKQST-VLAPVIDLKRGGSSDDRQIVDTPPHVAAGLKDPVPSGFSAGEVL 61
Query: 583 WNVANEYDPMWPNDYEKVAKELQAKR 660
+A+EYDPM+PNDYEKV K + +R
Sbjct: 62 IPLADEYDPMFPNDYEKVVKRQREER 87
>AL157395-5|CAH73599.1| 243|Homo sapiens RNA binding motif protein
17 protein.
Length = 243
Score = 47.6 bits (108), Expect = 5e-05
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Frame = +1
Query: 436 REALRRSTQVLTPVIDLK-SKSKDEEETNSSSPKIQP---KTITASLNVRDFDWNVANEY 603
R + + VL PVIDLK S D+ + + P + + + + + +A+EY
Sbjct: 9 RSQRTKQSTVLAPVIDLKRGGSSDDRQIVDTPPHVAAGLKDPVPSGFSAGEVLIPLADEY 68
Query: 604 DPMWPNDYEKVAKELQAKR 660
DPM+PNDYEKV K + +R
Sbjct: 69 DPMFPNDYEKVVKRQREER 87
>AL157395-9|CAH73603.1| 224|Homo sapiens RNA binding motif protein
17 protein.
Length = 224
Score = 38.7 bits (86), Expect = 0.023
Identities = 15/24 (62%), Positives = 20/24 (83%)
Frame = +1
Query: 589 VANEYDPMWPNDYEKVAKELQAKR 660
+A+EYDPM+PNDYEKV K + +R
Sbjct: 2 LADEYDPMFPNDYEKVVKRQREER 25
>X15187-1|CAA33261.1| 803|Homo sapiens precursor polypeptide (AA-21
to 782) protein.
Length = 803
Score = 30.3 bits (65), Expect = 7.9
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +1
Query: 487 KSKSKDEEETNSSSPKIQPKTITASLNVRDFDWNVANEYDPMWPNDYEKVAKE 645
K +S DE + +PKT V +DW + N+ P+W ++V ++
Sbjct: 303 KEESDDEAAVEEEEEEKKPKTKKVEKTV--WDWELMNDIKPIWQRPSKEVEED 353
>BC066656-1|AAH66656.1| 803|Homo sapiens heat shock protein 90kDa
beta (Grp94), member 1 protein.
Length = 803
Score = 30.3 bits (65), Expect = 7.9
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +1
Query: 487 KSKSKDEEETNSSSPKIQPKTITASLNVRDFDWNVANEYDPMWPNDYEKVAKE 645
K +S DE + +PKT V +DW + N+ P+W ++V ++
Sbjct: 303 KEESDDEAAVEEEEEEKKPKTKKVEKTV--WDWELMNDIKPIWQRPSKEVEED 353
>AY040226-1|AAK74072.1| 782|Homo sapiens heat shock protein gp96
precursor protein.
Length = 782
Score = 30.3 bits (65), Expect = 7.9
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +1
Query: 487 KSKSKDEEETNSSSPKIQPKTITASLNVRDFDWNVANEYDPMWPNDYEKVAKE 645
K +S DE + +PKT V +DW + N+ P+W ++V ++
Sbjct: 282 KEESDDEAAVEEEEEEKKPKTKKVEKTV--WDWELMNDIKPIWQRPSKEVEED 332
>AJ890084-1|CAI64497.1| 802|Homo sapiens tumor rejection antigen
(gp96) 1 protein.
Length = 802
Score = 30.3 bits (65), Expect = 7.9
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +1
Query: 487 KSKSKDEEETNSSSPKIQPKTITASLNVRDFDWNVANEYDPMWPNDYEKVAKE 645
K +S DE + +PKT V +DW + N+ P+W ++V ++
Sbjct: 303 KEESDDEAAVEEEEEEKKPKTKKVEKTV--WDWELMNDIKPIWQRPSKEVEED 353
>AB209534-1|BAD92771.1| 576|Homo sapiens tumor rejection antigen
(gp96) 1 variant protein.
Length = 576
Score = 30.3 bits (65), Expect = 7.9
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +1
Query: 487 KSKSKDEEETNSSSPKIQPKTITASLNVRDFDWNVANEYDPMWPNDYEKVAKE 645
K +S DE + +PKT V +DW + N+ P+W ++V ++
Sbjct: 329 KEESDDEAAVEEEEEEKKPKTKKVEKTV--WDWELMNDIKPIWQRPSKEVEED 379
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,342,567
Number of Sequences: 237096
Number of extensions: 1829574
Number of successful extensions: 3966
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3958
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9255747988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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