Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt1b14
(768 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ295864-1|ABB99954.1| 403|Drosophila melanogaster RNA binding ... 53 5e-07
AE014134-3632|EAA46008.1| 403|Drosophila melanogaster CG17540-P... 53 5e-07
BT012503-1|AAS93774.1| 363|Drosophila melanogaster AT25717p pro... 46 6e-05
AY071532-1|AAL49154.1| 379|Drosophila melanogaster RE57542p pro... 46 6e-05
AE014134-3634|EAA46009.2| 363|Drosophila melanogaster CG17540-P... 46 8e-05
BT012461-1|AAS93732.1| 371|Drosophila melanogaster RE44883p pro... 40 0.003
AE014134-3633|EAA46010.2| 371|Drosophila melanogaster CG17540-P... 40 0.003
AF070064-1|AAC72898.1| 1296|Drosophila melanogaster cap 'n' coll... 31 2.3
AE014297-3287|AAF56111.2| 1383|Drosophila melanogaster CG17894-P... 31 2.3
AY069581-1|AAL39726.1| 642|Drosophila melanogaster LD32037p pro... 29 5.3
AF154417-1|AAD38396.1| 644|Drosophila melanogaster hypoxia-indu... 29 5.3
AF020426-1|AAB88882.1| 644|Drosophila melanogaster basic helix-... 29 5.3
AF016053-1|AAB69695.1| 631|Drosophila melanogaster aryl hydroca... 29 5.3
AE014297-861|AAF54329.1| 642|Drosophila melanogaster CG11987-PA... 29 5.3
AB002556-1|BAA22868.1| 642|Drosophila melanogaster bHLH-PAS tra... 29 5.3
>DQ295864-1|ABB99954.1| 403|Drosophila melanogaster RNA binding
motif protein 17 protein.
Length = 403
Score = 52.8 bits (121), Expect = 5e-07
Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 9/122 (7%)
Frame = +1
Query: 307 MSLYDDLDTIKTRTTEKVAAWSSGIXXXXXXXXXXXAAVTQPKREALRRSTQVLTPVIDL 486
M LYD +DT + R+++ + WSSGI A V +P ++TPV++L
Sbjct: 1 MDLYDGIDT-RARSSQ-IDGWSSGIKMLQTQLAVKMA-VKKP----------LMTPVVNL 47
Query: 487 KSKSKDEEE--------TNSSSPKIQPKTITASLN-VRDFDWNVANEYDPMWPNDYEKVA 639
+SK + E T S P I K + + L + DW+VA+EYDP PN+YEK+
Sbjct: 48 RSKRLADPEVTCFAPITTVVSKPLISGKALPSILERINRGDWDVADEYDPQRPNEYEKLK 107
Query: 640 KE 645
++
Sbjct: 108 EK 109
>AE014134-3632|EAA46008.1| 403|Drosophila melanogaster CG17540-PA,
isoform A protein.
Length = 403
Score = 52.8 bits (121), Expect = 5e-07
Identities = 41/122 (33%), Positives = 63/122 (51%), Gaps = 9/122 (7%)
Frame = +1
Query: 307 MSLYDDLDTIKTRTTEKVAAWSSGIXXXXXXXXXXXAAVTQPKREALRRSTQVLTPVIDL 486
M LYD +DT + R+++ + WSSGI A V +P ++TPV++L
Sbjct: 1 MDLYDGIDT-RARSSQ-IDGWSSGIKMLQTQLAVKMA-VKKP----------LMTPVVNL 47
Query: 487 KSKSKDEEE--------TNSSSPKIQPKTITASLN-VRDFDWNVANEYDPMWPNDYEKVA 639
+SK + E T S P I K + + L + DW+VA+EYDP PN+YEK+
Sbjct: 48 RSKRLADPEVTCFAPITTVVSKPLISGKALPSILERINRGDWDVADEYDPQRPNEYEKLK 107
Query: 640 KE 645
++
Sbjct: 108 EK 109
>BT012503-1|AAS93774.1| 363|Drosophila melanogaster AT25717p
protein.
Length = 363
Score = 46.0 bits (104), Expect = 6e-05
Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 9/69 (13%)
Frame = +1
Query: 466 LTPVIDLKSKSKDEEE--------TNSSSPKIQPKTITASL-NVRDFDWNVANEYDPMWP 618
+TPV++L+SK + E T S P I K + + L ++ DW+VA+EYDP P
Sbjct: 1 MTPVVNLRSKRLADPEVTCFAPITTVVSKPLISGKALPSILESINRGDWDVADEYDPQRP 60
Query: 619 NDYEKVAKE 645
N+YEK+ ++
Sbjct: 61 NEYEKLKEK 69
>AY071532-1|AAL49154.1| 379|Drosophila melanogaster RE57542p
protein.
Length = 379
Score = 46.0 bits (104), Expect = 6e-05
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 9/70 (12%)
Frame = +1
Query: 463 VLTPVIDLKSKSKDEEE--------TNSSSPKIQPKTITASLN-VRDFDWNVANEYDPMW 615
++TPV++L+SK + E T S P I K + + L + DW+VA+EYDP
Sbjct: 16 LMTPVVNLRSKRLADPEVTCFAPITTVVSKPLISGKALPSILERINRGDWDVADEYDPQR 75
Query: 616 PNDYEKVAKE 645
PN+YEK+ ++
Sbjct: 76 PNEYEKLKEK 85
>AE014134-3634|EAA46009.2| 363|Drosophila melanogaster CG17540-PC,
isoform C protein.
Length = 363
Score = 45.6 bits (103), Expect = 8e-05
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 9/69 (13%)
Frame = +1
Query: 466 LTPVIDLKSKSKDEEE--------TNSSSPKIQPKTITASLN-VRDFDWNVANEYDPMWP 618
+TPV++L+SK + E T S P I K + + L + DW+VA+EYDP P
Sbjct: 1 MTPVVNLRSKRLADPEVTCFAPITTVVSKPLISGKALPSILERINRGDWDVADEYDPQRP 60
Query: 619 NDYEKVAKE 645
N+YEK+ ++
Sbjct: 61 NEYEKLKEK 69
>BT012461-1|AAS93732.1| 371|Drosophila melanogaster RE44883p
protein.
Length = 371
Score = 40.3 bits (90), Expect = 0.003
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +1
Query: 523 SSPKIQPKTITASLN-VRDFDWNVANEYDPMWPNDYEKVAKE 645
S P I K + + L + DW+VA+EYDP PN+YEK+ ++
Sbjct: 36 SKPLISGKALPSILERINRGDWDVADEYDPQRPNEYEKLKEK 77
>AE014134-3633|EAA46010.2| 371|Drosophila melanogaster CG17540-PB,
isoform B protein.
Length = 371
Score = 40.3 bits (90), Expect = 0.003
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +1
Query: 523 SSPKIQPKTITASLN-VRDFDWNVANEYDPMWPNDYEKVAKE 645
S P I K + + L + DW+VA+EYDP PN+YEK+ ++
Sbjct: 36 SKPLISGKALPSILERINRGDWDVADEYDPQRPNEYEKLKEK 77
>AF070064-1|AAC72898.1| 1296|Drosophila melanogaster cap 'n' collar
isoform C protein.
Length = 1296
Score = 30.7 bits (66), Expect = 2.3
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +1
Query: 493 KSKDEEETNSSSPKIQPKTITASLNVRDFDWNVANEYDPMWPNDYEKV--AKELQ 651
KSK E+ET SS P +I+ S +D D N NE +D EK+ +ELQ
Sbjct: 296 KSKPEDETKSSDP-----SISESSGFKDTDVNAENEASAASVDDIEKLKALEELQ 345
>AE014297-3287|AAF56111.2| 1383|Drosophila melanogaster CG17894-PC,
isoform C protein.
Length = 1383
Score = 30.7 bits (66), Expect = 2.3
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +1
Query: 493 KSKDEEETNSSSPKIQPKTITASLNVRDFDWNVANEYDPMWPNDYEKV--AKELQ 651
KSK E+ET SS P +I+ S +D D N NE +D EK+ +ELQ
Sbjct: 383 KSKPEDETKSSDP-----SISESSGFKDTDVNAENEASAASVDDIEKLKALEELQ 432
>AY069581-1|AAL39726.1| 642|Drosophila melanogaster LD32037p
protein.
Length = 642
Score = 29.5 bits (63), Expect = 5.3
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 547 TITASLNVRDFDWNVANEYDPMWPNDYEKVAKELQAKRLQ 666
++T LN DW + Y+ + P+D EK+ ++L + Q
Sbjct: 116 SVTPVLNYTQSDWYGTSLYEHIHPDDREKIREQLSTQESQ 155
>AF154417-1|AAD38396.1| 644|Drosophila melanogaster
hypoxia-inducible factor 1b protein.
Length = 644
Score = 29.5 bits (63), Expect = 5.3
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 547 TITASLNVRDFDWNVANEYDPMWPNDYEKVAKELQAKRLQ 666
++T LN DW + Y+ + P+D EK+ ++L + Q
Sbjct: 116 SVTPVLNYTQSDWYGTSLYEHIHPDDREKIREQLSTQESQ 155
>AF020426-1|AAB88882.1| 644|Drosophila melanogaster basic
helix-loop-helix PAS protein protein.
Length = 644
Score = 29.5 bits (63), Expect = 5.3
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 547 TITASLNVRDFDWNVANEYDPMWPNDYEKVAKELQAKRLQ 666
++T LN DW + Y+ + P+D EK+ ++L + Q
Sbjct: 116 SVTPVLNYTQSDWYGTSLYEHIHPDDREKIREQLSTQESQ 155
>AF016053-1|AAB69695.1| 631|Drosophila melanogaster aryl
hydrocarbon receptor nucleartranslocator-like protein
protein.
Length = 631
Score = 29.5 bits (63), Expect = 5.3
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 547 TITASLNVRDFDWNVANEYDPMWPNDYEKVAKELQAKRLQ 666
++T LN DW + Y+ + P+D EK+ ++L + Q
Sbjct: 116 SVTPVLNYTQSDWYGTSLYEHIHPDDREKIREQLSTQESQ 155
>AE014297-861|AAF54329.1| 642|Drosophila melanogaster CG11987-PA
protein.
Length = 642
Score = 29.5 bits (63), Expect = 5.3
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 547 TITASLNVRDFDWNVANEYDPMWPNDYEKVAKELQAKRLQ 666
++T LN DW + Y+ + P+D EK+ ++L + Q
Sbjct: 116 SVTPVLNYTQSDWYGTSLYEHIHPDDREKIREQLSTQESQ 155
>AB002556-1|BAA22868.1| 642|Drosophila melanogaster bHLH-PAS
transcription factor protein.
Length = 642
Score = 29.5 bits (63), Expect = 5.3
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 547 TITASLNVRDFDWNVANEYDPMWPNDYEKVAKELQAKRLQ 666
++T LN DW + Y+ + P+D EK+ ++L + Q
Sbjct: 116 SVTPVLNYTQSDWYGTSLYEHIHPDDREKIREQLSTQESQ 155
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,058,106
Number of Sequences: 53049
Number of extensions: 609116
Number of successful extensions: 1958
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1952
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3540671772
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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