Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1b10
         (184 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    23   5.3  
SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    22   9.3  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    22   9.3  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    22   9.3  

>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 46  TDNREIYEPNEEII 5
           T NRE+ E NEEI+
Sbjct: 452 TTNREVEEENEEIL 465


>SPAC6C3.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 87  QRINLFSLNLPSSIE*YQNLPPAEHSYN 170
           Q+IN+  LN+ +S      L   E SYN
Sbjct: 102 QKINVLQLNINASDNSLAYLSKPEESYN 129


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +3

Query: 84  NQRINLFSLNLPSSIE*YQNLPPAE--HSYNEQKK 182
           N+RI L  L  P+S + Y+ +P  E  H  N+  K
Sbjct: 148 NRRIVLEKLANPNSSKEYETIPTVENRHPLNKLSK 182


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 165 MNVLLVVNFDIIQLMMGDLKK 103
           M +++V  +DII   + DLK+
Sbjct: 517 MRIVVVTMYDIIVYFLSDLKR 537


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 537,100
Number of Sequences: 5004
Number of extensions: 6158
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 2,362,478
effective HSP length: 41
effective length of database: 2,157,314
effective search space used: 40988966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)