Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1b10
         (184 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   1.0  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    20   2.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    19   5.5  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    19   7.2  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    19   7.2  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    19   7.2  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    19   7.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    19   7.2  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 1.0
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +1

Query: 115 SHHQLNDIKIYHQQNIHIM 171
           SHH L+  ++ +QQ+ ++M
Sbjct: 72  SHHHLHHHQVLYQQSPYLM 90


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 20.2 bits (40), Expect = 2.4
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -2

Query: 174 VHYMNVLLVVNFD 136
           +H+ NV+  +NFD
Sbjct: 1   MHFNNVIKYINFD 13


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 6/16 (37%), Positives = 13/16 (81%)
 Frame = -2

Query: 150 VVNFDIIQLMMGDLKK 103
           V+  DI+++++ DL+K
Sbjct: 360 VIKHDILRMLIIDLRK 375


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = -2

Query: 183 FFFVHY 166
           FFF+HY
Sbjct: 480 FFFIHY 485


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = -2

Query: 183 FFFVHY 166
           FFF+HY
Sbjct: 466 FFFIHY 471


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = -2

Query: 183 FFFVHY 166
           FFF+HY
Sbjct: 500 FFFIHY 505


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 5/6 (83%), Positives = 6/6 (100%)
 Frame = -2

Query: 183 FFFVHY 166
           FFF+HY
Sbjct: 449 FFFIHY 454


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 171  HYMNVLLVVNFDIIQLMMGDLKK 103
            HY  V  V N DI+ L    ++K
Sbjct: 1035 HYSVVPFVSNHDILNLRPLSMEK 1057


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,497
Number of Sequences: 438
Number of extensions: 553
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 40
effective length of database: 128,823
effective search space used:  2576460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)