Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1b09
         (823 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    29   1.1  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    26   5.6  
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo...    25   9.8  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    25   9.8  

>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 365 ISYQKPVGMSFLHF-ELNCSKSNAIREVAMALNNLPVLLKHLKFLQTVQW 511
           IS+ +P   +  H  E  C+  N  RE+A   +  P+L+  L F+    W
Sbjct: 93  ISFNEPDSSNSHHNNESICNNDNCCREIARRRSLSPLLILPLNFINAFSW 142


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 9/31 (29%), Positives = 21/31 (67%)
 Frame = -1

Query: 808 SWVSQTNVSRNVASILKMLRSLFENFNSLDK 716
           +WV ++N + N+  + + L+SLF +++ L +
Sbjct: 546 NWVVKSNFNNNLRKLHEKLQSLFASYDKLQE 576


>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
           Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 568

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 410 LNCSKSNAIREVAMALNNLPVLLKHLKFLQTVQWV 514
           LN S S +  E  +   N+P+ LK L  L+  QW+
Sbjct: 359 LNQSNSVSSSEPIITKFNIPITLKDLHTLRNRQWL 393


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +2

Query: 512 VTSYYKWVLQ*IWLSWGFGVYRWHSFALIRSSEYEERF 625
           +T  Y+W L   W+ +G G++ +   +L+R  +   +F
Sbjct: 228 LTVIYRWYL---WVGFGVGLFAYLYLSLVRLHDIRAKF 262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,319,371
Number of Sequences: 5004
Number of extensions: 67159
Number of successful extensions: 148
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)