Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt1b09
(823 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0179 + 13500413-13500768,13502522-13502642,13502876-135029... 35 0.090
01_05_0662 - 24103475-24103735,24103831-24104085,24104280-241044... 34 0.16
06_01_0007 + 130582-131544,132187-132264,132615-132732,133228-13... 31 1.5
08_02_0520 - 18121561-18121821,18122216-18122470,18122560-181227... 30 1.9
10_08_0284 + 16479761-16479812,16479976-16480085,16480299-16480829 29 3.4
09_02_0504 - 10013784-10014041,10014558-10014660,10014932-100150... 28 7.8
09_02_0499 - 9917891-9918148,9918240-9918494,9918769-9918940,991... 28 7.8
>01_03_0179 +
13500413-13500768,13502522-13502642,13502876-13502998,
13504409-13504497,13504612-13504696,13504852-13505011,
13505096-13505160,13505296-13505349,13505437-13505527,
13505685-13505986,13506084-13506365,13506451-13506764,
13506920-13507080,13507202-13507305,13507379-13507535,
13507652-13507896,13507995-13508327,13508428-13508751,
13508816-13508899,13509001-13509169,13509610-13509731,
13510538-13510792,13511115-13511252
Length = 1377
Score = 34.7 bits (76), Expect = 0.090
Identities = 21/79 (26%), Positives = 33/79 (41%)
Frame = +2
Query: 389 MSFLHFELNCSKSNAIREVAMALNNLPVLLKHLKFLQTVQWVTSYYKWVLQ*IWLSWGFG 568
M L+F L+ N E+ M + LPV K L W + W+LQ + G
Sbjct: 604 MGALYFALDTIMFNGFAELGMTVMKLPVFFKQRDLLFFPAWTYTIPSWILQIPVTFFEVG 663
Query: 569 VYRWHSFALIRSSEYEERF 625
VY + ++ ++ RF
Sbjct: 664 VYVFTTYYVVGFDPNVSRF 682
>01_05_0662 -
24103475-24103735,24103831-24104085,24104280-24104451,
24104535-24104762,24104864-24104997,24105101-24105184,
24105273-24105563,24105660-24105992,24106081-24106334,
24106435-24106591,24106674-24106777,24106879-24107039,
24107216-24107529,24107614-24107895,24107991-24108292,
24108367-24108457,24108566-24108619,24108785-24108861,
24108963-24109207,24109322-24109410,24110811-24111254
Length = 1443
Score = 33.9 bits (74), Expect = 0.16
Identities = 22/76 (28%), Positives = 32/76 (42%)
Frame = +2
Query: 398 LHFELNCSKSNAIREVAMALNNLPVLLKHLKFLQTVQWVTSYYKWVLQ*IWLSWGFGVYR 577
L+F L+ N E+AM + LPV K L W + W+LQ GVY
Sbjct: 559 LYFALDTVMFNGFAELAMTVMKLPVFFKQRDLLFFPAWAYTIPSWILQIPITFLEVGVYV 618
Query: 578 WHSFALIRSSEYEERF 625
+ ++ +I RF
Sbjct: 619 FITYYVIGFDPSVSRF 634
>06_01_0007 +
130582-131544,132187-132264,132615-132732,133228-133271,
133389-133448,133536-133588,133671-133837,133963-134167,
134989-135046,135225-135281,135363-135608,135938-136002,
136090-136158,136238-136331,136467-136607,137159-137304,
137452-138110,138222-138335,138406-138560
Length = 1163
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +2
Query: 395 FLHFELNCSKSNAIREVAMALNNLPVLLKHLKFLQTVQWVTSYYKWVLQ 541
FLH +L ++ + VA++ NN+ + L HL ++ + Y W L+
Sbjct: 350 FLHHKLKSLEAFCVN-VALSQNNIKIPLPHLMLVRAIPGTPGYTNWSLK 397
>08_02_0520 -
18121561-18121821,18122216-18122470,18122560-18122731,
18122824-18123105,18123159-18123292,18123425-18123508,
18123611-18123901,18123982-18124314,18124620-18124750,
18124826-18124930,18125011-18125167,18125248-18125351,
18125442-18125602,18125800-18126116,18126369-18126650,
18127011-18127312,18127609-18127699,18127771-18127824,
18128110-18128186,18128279-18128438,18128545-18128629,
18129059-18129367,18129514-18129890
Length = 1507
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/53 (30%), Positives = 23/53 (43%)
Frame = +2
Query: 383 VGMSFLHFELNCSKSNAIREVAMALNNLPVLLKHLKFLQTVQWVTSYYKWVLQ 541
V + L F + N E+AMA LPV K +L W + W+L+
Sbjct: 606 VYLGALFFAMVAHMFNGFSELAMATIKLPVFFKQRDYLFFPSWAYTIPTWILK 658
>10_08_0284 + 16479761-16479812,16479976-16480085,16480299-16480829
Length = 230
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 537 YNKFGYPGVSGCIDGTHLHLSDLLNMKKGFR 629
Y++ G G IDGTH+ S NM+ FR
Sbjct: 48 YDRSGETDCIGAIDGTHIRASVRKNMESSFR 78
>09_02_0504 -
10013784-10014041,10014558-10014660,10014932-10015093,
10015416-10015549,10015633-10015716,10015839-10016129,
10016362-10016694,10016823-10016965,10017273-10017429,
10017513-10017616,10017728-10017888,10017971-10018287,
10018396-10018677,10018759-10019226,10019338-10019391,
10019689-10019742,10019943-10020021,10020108-10020196,
10021153-10021273,10022321-10022637
Length = 1236
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 428 NAIREVAMALNNLPVLLKHLKFLQTVQWVTSYYKWVLQ 541
+A+ E+ A+ LPVL K L W S W+++
Sbjct: 530 SALAEMGPAIAKLPVLFKQRDLLYYPSWTYSLPSWIIK 567
>09_02_0499 -
9917891-9918148,9918240-9918494,9918769-9918940,
9919056-9919283,9919628-9919761,9919842-9919925,
9920007-9920297,9920569-9920901,9921029-9921171,
9921266-9921379,9921470-9921626,9921709-9921812,
9921914-9922074,9922158-9922474,9922574-9922855,
9923205-9923506,9923603-9923693,9923864-9923917,
9924052-9924128,9924213-9924372,9924473-9924557,
9924635-9924723,9925791-9925925
Length = 1341
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/51 (27%), Positives = 21/51 (41%)
Frame = +2
Query: 389 MSFLHFELNCSKSNAIREVAMALNNLPVLLKHLKFLQTVQWVTSYYKWVLQ 541
M L F + N + EV + + LPV K L W S W+++
Sbjct: 454 MGALFFGILMIMFNGLAEVGLTIAKLPVFFKQRDLLFYPAWTYSLPSWIIK 504
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,542,466
Number of Sequences: 37544
Number of extensions: 368006
Number of successful extensions: 716
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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