Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1b09
         (823 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83232-4|CAB05756.2|  891|Caenorhabditis elegans Hypothetical pr...    29   5.3  
Z66499-5|CAE17941.1|  143|Caenorhabditis elegans Hypothetical pr...    29   5.3  
Z48245-1|CAA88290.1|  356|Caenorhabditis elegans Hypothetical pr...    28   7.0  

>Z83232-4|CAB05756.2|  891|Caenorhabditis elegans Hypothetical
           protein K04B12.3 protein.
          Length = 891

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -3

Query: 413 LTQNAKSSFPQVSGMKFCNAVNTLHFTFYSCSF 315
           L  N KS++        C  +  LHF F SC F
Sbjct: 90  LKSNPKSNYFDAMAESECQQIRMLHFLFISCHF 122


>Z66499-5|CAE17941.1|  143|Caenorhabditis elegans Hypothetical
           protein T01B7.9 protein.
          Length = 143

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 365 FCNAVNTLHFTFYSC 321
           FCN+V T HFT +SC
Sbjct: 120 FCNSVPTHHFTLFSC 134


>Z48245-1|CAA88290.1|  356|Caenorhabditis elegans Hypothetical
           protein T27D1.3 protein.
          Length = 356

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = -2

Query: 444 TSLMALDLLQFNSKCKKLIPTGFWYEILQCC*HLAFYFLFLFVLMI 307
           T+ +   L Q ++ C   +    W++  +    LAFYF+  F++ +
Sbjct: 168 TNSLRFKLFQLSATCSNTVGKSTWWQGYKLTEFLAFYFVPCFIITV 213


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,266,627
Number of Sequences: 27780
Number of extensions: 376696
Number of successful extensions: 792
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)