Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt1b04
(749 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032648-3|CAA21695.1| 319|Caenorhabditis elegans Hypothetical ... 30 2.0
Z96047-4|CAB09414.1| 796|Caenorhabditis elegans Hypothetical pr... 29 4.7
U41031-3|AAA82620.1| 164|Caenorhabditis elegans Hypothetical pr... 28 6.2
Z83236-1|CAB05777.1| 445|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 28 8.1
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 28 8.1
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 28 8.1
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 28 8.1
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 28 8.1
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 28 8.1
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 28 8.1
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 28 8.1
>AL032648-3|CAA21695.1| 319|Caenorhabditis elegans Hypothetical
protein Y54G9A.4 protein.
Length = 319
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = -3
Query: 747 ITALGGITPSRLSNHL--TLSGRAQHTSMF*TAFSFPPHGTYAEKCFTHNLPGIRSPW 580
+T + G+ P ++ ++L T S QH+S+ + FS G + CF LP W
Sbjct: 17 MTIIFGLLPIKVISYLNTTKSAIHQHSSLILSLFSCFAGGVFLSVCFLDMLPDCLEAW 74
>Z96047-4|CAB09414.1| 796|Caenorhabditis elegans Hypothetical
protein DY3.5 protein.
Length = 796
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +2
Query: 368 PAPTAPRGHVTPHGAFGYQSYPYVTPTQSYDTTIEWVPTTPQNASILSEKA 520
P PT P + P + +S P +PT T P TPQN ++ S A
Sbjct: 621 PPPTRPASVIAPSSSVVPKSQPRPSPTTRPPTRATIRP-TPQNKAVTSRPA 670
>U41031-3|AAA82620.1| 164|Caenorhabditis elegans Hypothetical
protein C16B8.3 protein.
Length = 164
Score = 28.3 bits (60), Expect = 6.2
Identities = 22/80 (27%), Positives = 25/80 (31%)
Frame = +2
Query: 317 GYSLGQQPAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPYVTPTQSYDTTIEWVPTTPQN 496
G +G P G T AP P G GY PTQ Y + P PQ
Sbjct: 45 GAGVGYAPPPPRPYGATYAPPPPMGIGAGVNPSGYVQQAPPLPTQGYSAYNQQPPPLPQQ 104
Query: 497 ASILSEKAVVAGYEGHDGSP 556
+ GY G P
Sbjct: 105 PYQTNMYPSNPGYSSTPGYP 124
>Z83236-1|CAB05777.1| 445|Caenorhabditis elegans Hypothetical
protein K10H10.1 protein.
Length = 445
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +2
Query: 365 TPAPTAPRGHVTPHGAFGYQSYPYVTPTQSYDTTIEWVPT 484
+P P+ P G + H AF + T SY W+P+
Sbjct: 241 SPCPSVPWGTLFRHPAFWAAAVAQYTGGNSYSILFNWLPS 280
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Frame = -3
Query: 417 PNAPCGVTWPRGAVGAGVIPG*DIAAG----CCPRLYPGWNEC 301
P P G+ RGAVG PG D G P PGW+ C
Sbjct: 82 PPGPVGIKGDRGAVGVPGFPGNDGGNGRPGEPGPPGAPGWDGC 124
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Frame = -3
Query: 417 PNAPCGVTWPRGAVGAGVIPG*DIAAG----CCPRLYPGWNEC 301
P P G+ RGAVG PG D G P PGW+ C
Sbjct: 82 PPGPVGIKGDRGAVGVPGFPGNDGGNGRPGEPGPPGAPGWDGC 124
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Frame = -3
Query: 417 PNAPCGVTWPRGAVGAGVIPG*DIAAG----CCPRLYPGWNEC 301
P P G+ RGAVG PG D G P PGW+ C
Sbjct: 82 PPGPVGIKGDRGAVGVPGFPGNDGGNGRPGEPGPPGAPGWDGC 124
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Frame = -3
Query: 417 PNAPCGVTWPRGAVGAGVIPG*DIAAG----CCPRLYPGWNEC 301
P P G+ RGAVG PG D G P PGW+ C
Sbjct: 82 PPGPVGIKGDRGAVGVPGFPGNDGGNGRPGEPGPPGAPGWDGC 124
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
collagen protein.
Length = 1795
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/43 (39%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Frame = -3
Query: 417 PNAPCGVTWPRGAVGAGVIPG*DIAAG----CCPRLYPGWNEC 301
P P G+ RGAVG PG D G P PGW+ C
Sbjct: 82 PPGPVGIKGDRGAVGVPGFPGNDGGNGRPGEPGPPGAPGWDGC 124
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 27.9 bits (59), Expect = 8.1
Identities = 23/66 (34%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Frame = +2
Query: 374 PTAPRGHVTPHGAFGYQSYPYVTPT-QSYDTTIEWVPTTP---QNASILSEKAVVAGYEG 541
P P G V P G YP VTP Q T + P P + S L A A G
Sbjct: 5730 PVGPDGQVLPTDESGNYIYPDVTPDGQVQPTDVSGKPVYPVRGPDGSTLPTDASGAAL-G 5788
Query: 542 HDGSPL 559
DG P+
Sbjct: 5789 PDGKPI 5794
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 27.9 bits (59), Expect = 8.1
Identities = 23/66 (34%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Frame = +2
Query: 374 PTAPRGHVTPHGAFGYQSYPYVTPT-QSYDTTIEWVPTTP---QNASILSEKAVVAGYEG 541
P P G V P G YP VTP Q T + P P + S L A A G
Sbjct: 5775 PVGPDGQVLPTDESGNYIYPDVTPDGQVQPTDVSGKPVYPVRGPDGSTLPTDASGAAL-G 5833
Query: 542 HDGSPL 559
DG P+
Sbjct: 5834 PDGKPI 5839
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 27.9 bits (59), Expect = 8.1
Identities = 23/66 (34%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Frame = +2
Query: 374 PTAPRGHVTPHGAFGYQSYPYVTPT-QSYDTTIEWVPTTP---QNASILSEKAVVAGYEG 541
P P G V P G YP VTP Q T + P P + S L A A G
Sbjct: 5775 PVGPDGQVLPTDESGNYIYPDVTPDGQVQPTDVSGKPVYPVRGPDGSTLPTDASGAAL-G 5833
Query: 542 HDGSPL 559
DG P+
Sbjct: 5834 PDGKPI 5839
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,375,056
Number of Sequences: 27780
Number of extensions: 424087
Number of successful extensions: 1380
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1380
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -