Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1b04
         (749 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    26   0.33 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   4.0  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   4.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   4.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   5.3  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    22   7.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   7.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   7.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   7.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.1  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   9.3  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   9.3  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 26.2 bits (55), Expect = 0.33
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 311 QPGYSLGQQPAAMSYPGITPAPTAPRGHVTPHGA 412
           QPG    QQ  A  + G+  +P + +    P GA
Sbjct: 218 QPGMHPRQQQQAQQHQGVVTSPLSQQQQAAPQGA 251


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 413 FGYQSYPYVTPTQSYDTTIEWVPTTPQNASILSEKAVVAGY 535
           F Y  Y Y   TQ+ ++ I  +PT      I+    + AGY
Sbjct: 27  FDYYFYDYSNRTQALESIIANIPTWLSFIRIVLVILLRAGY 67


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +3

Query: 603 SYA*NISLHMFRGEEKKMPFKTLRCA 680
           +YA N SLH  R     +    L CA
Sbjct: 29  TYALNQSLHFVRASLSNLDMSVLECA 54


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +3

Query: 603 SYA*NISLHMFRGEEKKMPFKTLRCA 680
           +YA N SLH  R     +    L CA
Sbjct: 119 TYALNQSLHFVRASLSNLDMSVLECA 144


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +2

Query: 308 FQPGYSLGQQPAAMSYPGITPAPTAPRGHVTPHGAFGYQSYPYVTPTQSYD 460
           F+PG  LG+Q   +S P +       RG +   GA+G +  P V   +  D
Sbjct: 171 FEPGKGLGKQLQGISTP-VEAHLRKGRGAI---GAYGPEKGPKVPEKKKED 217


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 13/41 (31%), Positives = 16/41 (39%)
 Frame = +1

Query: 193 PTPRTNLPIALQSCKCSTSWPA*CTTKLSCAWL*CSTFIPT 315
           P PR N    L SC C        +  L C     +T +PT
Sbjct: 49  PAPRINSKSPLLSCACPDGLKL-LSDGLMCVEKVSTTIVPT 88


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -1

Query: 245 VEHLQDCRAMGKLVLGVGDNLGFRMDI 165
           + ++Q  R +     GVG N+G+++ I
Sbjct: 135 INNVQGLRGLKSCHTGVGRNVGYKIPI 161


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -1

Query: 245 VEHLQDCRAMGKLVLGVGDNLGFRMDI 165
           + ++Q  R +     GVG N+G+++ I
Sbjct: 135 INNVQGLRGLKSCHTGVGRNVGYKIPI 161


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -1

Query: 245 VEHLQDCRAMGKLVLGVGDNLGFRMDI 165
           + ++Q  R +     GVG N+G+++ I
Sbjct: 135 INNVQGLRGLKSCHTGVGRNVGYKIPI 161


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 553  SPLGDQVSVPRRSNPRQVMRETFLCICSV 639
            SP+ +Q S+PRR    +    T L   SV
Sbjct: 1830 SPMSEQKSLPRRGRSSRSSLRTLLPPISV 1858


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 553  SPLGDQVSVPRRSNPRQVMRETFLCICSV 639
            SP+ +Q S+PRR    +    T L   SV
Sbjct: 1826 SPMSEQKSLPRRGRSSRSSLRTLLPPISV 1854


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -2

Query: 304 MLNIITRHRIIWWY 263
           +L  +T HR  WW+
Sbjct: 18  ILIFVTSHRPAWWF 31


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -1

Query: 158 FSISVNLLLKFQNTR-NTYLITAQNSEFRDPTFRLGRYRSEILRHLFR 18
           F  S+ L L + N+  N  +    N +FR P   +  +R   L H+ R
Sbjct: 407 FLSSLFLWLGYCNSLLNPIIYATLNRDFRKPFREILYFRCSNLNHMMR 454


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,869
Number of Sequences: 438
Number of extensions: 4827
Number of successful extensions: 16
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)