Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1b02
         (551 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    37   0.002
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    28   0.80 
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    28   1.1  
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi...    27   2.4  
SPCC24B10.14c |xlf1|nej1, mug104|xrcc4 like factor|Schizosacchar...    26   3.2  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    26   4.2  
SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces po...    26   4.2  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    25   7.4  
SPAC19B12.11c |||zinc finger protein|Schizosaccharomyces pombe|c...    25   7.4  
SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces po...    25   7.4  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   9.8  
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    25   9.8  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    25   9.8  

>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 36.7 bits (81), Expect = 0.002
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 184 PWCWYCNREFDDEKILIQHQKAKHFKCHIC 273
           P C +CN  F D+  L +H + KH +C+IC
Sbjct: 245 PKCEFCNTHFYDDDELFKHCREKHERCYIC 274


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -2

Query: 256 NASLSDVG*ESFRRQTPCYNTSTKVWMPSSSSY 158
           N SL +V    F++QTP YN + KV +  SS +
Sbjct: 819 NYSLENVVLNIFKKQTPYYNQADKVHLWQSSRF 851


>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = -2

Query: 427 FHIFRGYTFHSINFYFLYXTYSAVNLVLCLWLLYVXACSVW 305
           F I    TFH I F FLY    A  ++L  +  Y      W
Sbjct: 80  FEIRFASTFHRIPFQFLYLAVIATVIILASYYGYFDGVPAW 120


>SPAC1002.16c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 253 HFKCHICHKKLYTGPGLSI 309
           +F C++C   +YTG GL++
Sbjct: 380 YFACYLCSVGVYTGAGLNV 398


>SPCC24B10.14c |xlf1|nej1, mug104|xrcc4 like
           factor|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 203

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -2

Query: 415 RGYTFHSINFYFLYXTYSAVNLVLCLWLLYVXACSVWTVQVLCTAFCDKCDI 260
           RG+ FH I   F   +  AV ++    L+ V +C+    Q++  A  ++C I
Sbjct: 7   RGHRFHFIQASFDAESNEAVQVIHITDLVRVWSCTCSRNQIVNQAESERCPI 58


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -2

Query: 412 GYTFHSINFYFLYXTYSAVNLVLCLWLLYVXACSVWTVQ 296
           GYT +S N      T + + L++C + L+V      T+Q
Sbjct: 267 GYTRYSTNMRDRLFTEAKIPLIICFFALFVVRFFAITIQ 305


>SPCC663.06c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -3

Query: 333 FFMYXHAVYGQSRSCVQLFVTNVTFKMLRFLMLDENLFVVKL 208
           FF +  + YGQS++ +     N T K + F + DE   V+ +
Sbjct: 150 FFPFNQSGYGQSKAAL-----NFTMKEISFELQDEGFIVISI 186


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = +1

Query: 190 CWYCNRE-FDDEKILIQHQKAKHFKC 264
           CW+CN+  F +  +L   Q A H  C
Sbjct: 837 CWHCNQPLFSEPFVLFPCQHAFHRSC 862


>SPAC19B12.11c |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 124

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 187 WCWYCNREFDDEKILIQHQKAKHFK 261
           +C  C R FD  + L+ H+K K  K
Sbjct: 57  YCIECARYFDSSQALLVHKKGKVHK 81


>SPCC663.08c |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 333 FFMYXHAVYGQSRSCVQLFVTNVTFKMLRFLMLDENLFVVKL 208
           FF    + YGQS++ +     N T K + F + DE   V+ +
Sbjct: 150 FFPSSQSAYGQSKAAL-----NYTMKEISFELQDEGFIVISI 186


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 294 SCVQLFVTNVTFKMLRFLMLDENL 223
           S + LF++ ++FK L F + D NL
Sbjct: 543 SYIDLFISLMSFKNLNFKLFDYNL 566


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +1

Query: 190 CWYCNREFDDEKILIQHQKAKHFKCHICHKKL 285
           C +CN++F    +L        F C++C  +L
Sbjct: 138 CPFCNKKFSSLDVLSLVTNEGTFACNVCGTEL 169


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 275 TKSCTQDLDCPYT 313
           TKSC+  +DCP+T
Sbjct: 281 TKSCSAAVDCPHT 293


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,939,483
Number of Sequences: 5004
Number of extensions: 34404
Number of successful extensions: 122
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)