Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1b02
         (551 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    29   0.024
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    27   0.096
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    23   2.1  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    23   2.7  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   4.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   8.3  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 29.5 bits (63), Expect = 0.024
 Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
 Frame = +1

Query: 151 KMGRKKKKASKPW-CWYCNREFDDEKILIQHQKA----KHFKCHICHKKLYTGPGLSIHC 315
           K+  +     KP+ C  C + F    +L  HQ A    K +KC +CH+   +   + +H 
Sbjct: 220 KVHTRTHTGEKPYTCDICGKSFGYNHVLKLHQVAHYGEKVYKCTLCHETFGSKKTMELHI 279

Query: 316 MXVHKEAIDKVPNSLP 363
                 ++   P   P
Sbjct: 280 KTHSDSSVVGSPRDSP 295



 Score = 27.9 bits (59), Expect = 0.072
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = +1

Query: 181 KPW-CWYCNREFDDEKILIQHQ----KAKHFKCHICHKKLYTGPGLSIHCMXVH 327
           KP+ C YC++ F  ++ L  H+    K + +KC +C +       L  H M +H
Sbjct: 118 KPYQCEYCSKSFSVKENLSVHRRIHTKERPYKCDVCERAFEHSGKLHRH-MRIH 170



 Score = 24.6 bits (51), Expect = 0.67
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
 Frame = +1

Query: 169 KKASKPW-CWYCNREFDDEKILIQHQKA----KHFKCHICHKKLYTGPGLSIH 312
           K+   P+ C  C + F     L +H +     K ++C  C K       LS+H
Sbjct: 86  KEGEDPYRCNICGKTFAVPARLTRHYRTHTGEKPYQCEYCSKSFSVKENLSVH 138


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 27.5 bits (58), Expect = 0.096
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
 Frame = +1

Query: 190 CWYCNREFDDEKILIQHQKAKH------FKCHICHKKLYTGPGLSIHCMXVHK 330
           C YC R F     L +H + KH      + C  C+++  T   L+ H    H+
Sbjct: 8   CPYCRRNFSCYYSLKRHFQDKHEQSDTLYVCEFCNRRYRTKNSLTTHKSLQHR 60


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +1

Query: 238 HQKAKHFKCHICHKKLYTGPGLSIHCMXVH 327
           H   K F+C  CHK+      L  H M +H
Sbjct: 4   HTGEKPFECPECHKRFTRDHHLKTH-MRLH 32


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 14/54 (25%), Positives = 20/54 (37%)
 Frame = +1

Query: 250 KHFKCHICHKKLYTGPGLSIHCMXVHKEAIDKVPNSLPNRSXIGNRNLWNGRYT 411
           K F C +C K L +   L  H    H E  ++    +  R      +L    YT
Sbjct: 4   KLFTCQLCGKVLCSKASLKRHVADKHAERQEEYRCVICERVYCSRNSLMTHIYT 57



 Score = 21.8 bits (44), Expect = 4.8
 Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 6/53 (11%)
 Frame = +1

Query: 190 CWYCNREFDDEKILIQHQKAKH------FKCHICHKKLYTGPGLSIHCMXVHK 330
           C  C +    +  L +H   KH      ++C IC +   +   L  H    HK
Sbjct: 8   CQLCGKVLCSKASLKRHVADKHAERQEEYRCVICERVYCSRNSLMTHIYTYHK 60


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 220 RRQTPCYNTSTKVWMPSSSSYP 155
           RR+TP YN+ +K+   S   +P
Sbjct: 411 RRRTPRYNSVSKIDRASRIVFP 432


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 5/9 (55%), Positives = 9/9 (100%)
 Frame = +3

Query: 393  MEWKVYPLK 419
            M+WK++P+K
Sbjct: 1018 MQWKIWPMK 1026


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,011
Number of Sequences: 438
Number of extensions: 2234
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)