Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt1a24
         (589 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT029033-1|ABJ16966.1|  485|Drosophila melanogaster IP02838p pro...    28   8.2  
AY672641-1|AAV91002.1|  485|Drosophila melanogaster histamine-ga...    28   8.2  
AY672640-1|AAV91001.1|  485|Drosophila melanogaster histamine-ga...    28   8.2  
AY672639-1|AAV91000.1|  485|Drosophila melanogaster histamine-ga...    28   8.2  
AY049774-1|AAL12210.1|  485|Drosophila melanogaster histamine-ga...    28   8.2  
AF435469-1|AAL74413.1|  485|Drosophila melanogaster histamine-ga...    28   8.2  
AF411340-1|AAL05873.1|  485|Drosophila melanogaster histamine-ga...    28   8.2  
AF382403-1|AAL66188.1|  485|Drosophila melanogaster histamine-ga...    28   8.2  
AE014297-2697|AAF55691.1|  485|Drosophila melanogaster CG7411-PA...    28   8.2  

>BT029033-1|ABJ16966.1|  485|Drosophila melanogaster IP02838p
           protein.
          Length = 485

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 306 IRNQTVKCSKVFITLNFNCKSI 371
           IRN+T  C++V+ T NF C  +
Sbjct: 207 IRNETADCTQVYSTGNFTCLEV 228


>AY672641-1|AAV91002.1|  485|Drosophila melanogaster histamine-gated
           chloride channelsubunit protein.
          Length = 485

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 306 IRNQTVKCSKVFITLNFNCKSI 371
           IRN+T  C++V+ T NF C  +
Sbjct: 207 IRNETADCTQVYSTGNFTCLEV 228


>AY672640-1|AAV91001.1|  485|Drosophila melanogaster histamine-gated
           chloride channelsubunit protein.
          Length = 485

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 306 IRNQTVKCSKVFITLNFNCKSI 371
           IRN+T  C++V+ T NF C  +
Sbjct: 207 IRNETADCTQVYSTGNFTCLEV 228


>AY672639-1|AAV91000.1|  485|Drosophila melanogaster histamine-gated
           chloride channelsubunit protein.
          Length = 485

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 306 IRNQTVKCSKVFITLNFNCKSI 371
           IRN+T  C++V+ T NF C  +
Sbjct: 207 IRNETADCTQVYSTGNFTCLEV 228


>AY049774-1|AAL12210.1|  485|Drosophila melanogaster histamine-gated
           chloride channelsubunit A protein.
          Length = 485

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 306 IRNQTVKCSKVFITLNFNCKSI 371
           IRN+T  C++V+ T NF C  +
Sbjct: 207 IRNETADCTQVYSTGNFTCLEV 228


>AF435469-1|AAL74413.1|  485|Drosophila melanogaster histamine-gated
           chloride channelalpha1 subunit protein.
          Length = 485

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 306 IRNQTVKCSKVFITLNFNCKSI 371
           IRN+T  C++V+ T NF C  +
Sbjct: 207 IRNETADCTQVYSTGNFTCLEV 228


>AF411340-1|AAL05873.1|  485|Drosophila melanogaster histamine-gated
           chloride channelsubunit 1 protein.
          Length = 485

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 306 IRNQTVKCSKVFITLNFNCKSI 371
           IRN+T  C++V+ T NF C  +
Sbjct: 207 IRNETADCTQVYSTGNFTCLEV 228


>AF382403-1|AAL66188.1|  485|Drosophila melanogaster histamine-gated
           chloride channelsubunit 2 protein.
          Length = 485

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 306 IRNQTVKCSKVFITLNFNCKSI 371
           IRN+T  C++V+ T NF C  +
Sbjct: 207 IRNETADCTQVYSTGNFTCLEV 228


>AE014297-2697|AAF55691.1|  485|Drosophila melanogaster CG7411-PA
           protein.
          Length = 485

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 306 IRNQTVKCSKVFITLNFNCKSI 371
           IRN+T  C++V+ T NF C  +
Sbjct: 207 IRNETADCTQVYSTGNFTCLEV 228


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,335,142
Number of Sequences: 53049
Number of extensions: 412696
Number of successful extensions: 1020
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2358819486
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)